Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,043,289 – 5,043,398 |
Length | 109 |
Max. P | 0.813313 |
Location | 5,043,289 – 5,043,398 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.96 |
Mean single sequence MFE | -31.26 |
Consensus MFE | -13.06 |
Energy contribution | -13.10 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.27 |
Mean z-score | -2.48 |
Structure conservation index | 0.42 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5043289 109 - 22224390 AGUGUAUAGACCAGUGGACAGGAUGCUUGGAAGGGGGAGGGGAGG-------GGACUCACUCCUCUGC-ACUGG-AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA .(.(((((((((((((..((((...))))...(((((((..(((.-------...))).))))))).)-)))))-....((((.......))))..........))))))))...... ( -34.50) >DroPse_CAF1 2345 97 - 1 AGUACAUAGUCGA----------GGCGGGGCAGUGGAAGGGCAGG-------GG----GCUGUUCUGCCACGGGAAAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCGUAAAA ..(((....(((.----------(((((((((((...........-------..----))))))))))).)))............(((((((............))))))).)))... ( -24.52) >DroSec_CAF1 2159 116 - 1 AGUGUAUAGACCAGUGGACAGGAGGCUUGGAAGGGGGAGGGGGGAGUUGGAAGGGCUCACUCCUCUGC-ACUGG-AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA .(.(((((((((((((..((((...))))......(((((((.(((((.....))))).))))))).)-)))))-....((((.......))))..........))))))))...... ( -32.50) >DroSim_CAF1 2255 116 - 1 AGUGUAUAGACCAGUGGACAGGAGGCUUGGAAGGGGGAGGGGGGAGUUGGAAGGGCUCACUCCUCUGC-ACUGG-AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA .(.(((((((((((((..((((...))))......(((((((.(((((.....))))).))))))).)-)))))-....((((.......))))..........))))))))...... ( -32.50) >DroYak_CAF1 7155 116 - 1 AGUGUAUAGUCCAGUGGACAGGAGGCUUGGCAGGGUCGAAGGGGAAUGGGAAGGACUCACUCCUCUGC-ACUGG-AAAUUGUUCAGCAUAGACAUUAAAAUAAAUGUAUGCCAUAAAA ..((.(((.(((((((.......(((((....)))))..((((((.((((.....)))).)))))).)-)))))-)...))).))((((..(((((......)))))))))....... ( -32.30) >consensus AGUGUAUAGACCAGUGGACAGGAGGCUUGGAAGGGGGAGGGGGGA_U_GGAAGGACUCACUCCUCUGC_ACUGG_AAAUUGUUAAGCAUAGACAUUAAAAUAAAUUUAUGCCAUAAAA ..........(((((..........(((....)))..(((((((...............)))))))...)))))...........(((((((............)))))))....... (-13.06 = -13.10 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:36 2006