Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,043,162 – 5,043,257 |
Length | 95 |
Max. P | 0.833024 |
Location | 5,043,162 – 5,043,257 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -23.64 |
Consensus MFE | -20.68 |
Energy contribution | -20.76 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.40 |
Structure conservation index | 0.87 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5043162 95 - 22224390 AUGUGUAUAAACACUGGGUGGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGCUUGCCCCCG ..((((....)))).(((.((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))...))))). ( -27.30) >DroSec_CAF1 2028 95 - 1 AUGUGUAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGUUUGCCCCUG ..((((....)))).((((((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))))))))... ( -24.40) >DroSim_CAF1 2122 95 - 1 AUGUGUAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGUUUGCCCCUG ..((((....)))).((((((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))))))))... ( -24.40) >DroEre_CAF1 7201 94 - 1 -UAUACAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAACUUUUCAGUUUGCCCCUG -..............(((((((((.(..(((((..(((.((...(((((((.(....).))))).)))))).)..)))))..))))))))))... ( -22.20) >DroYak_CAF1 7046 89 - 1 ------AUAAACACUGGGUAGAGUUGGGAAGUUGACAGAGCACAGAAAACGCUGAAAAUUGUUUAUCACCAUGAAAAGUUUUCAGUUUGCCCCUG ------.........((((((.((..(....)..))..............((((((((((.(((((....))))).))))))))))))))))... ( -19.90) >consensus AUGUGUAUAAACACUGGGUAGAUUUGGGAAGUUGACUGAGCACAGAAAACGCUGAAAAUUGUUUAUCGCCAUGAAAAGUUUUCAGUUUGCCCCUG ...............((((((.........(((..(((....)))..)))((((((((((.(((((....))))).))))))))))))))))... (-20.68 = -20.76 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:35 2006