Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,042,126 – 5,042,225 |
Length | 99 |
Max. P | 0.500000 |
Location | 5,042,126 – 5,042,225 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.33 |
Mean single sequence MFE | -30.38 |
Consensus MFE | -23.54 |
Energy contribution | -23.73 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.19 |
Mean z-score | -1.12 |
Structure conservation index | 0.77 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5042126 99 + 22224390 GGCGGUUGUUGCGAGGCGGAAAGUCCCGACAGUCAAGUCAAUGUCAAAGGACAAGGAGAAGACUGUCAUUUGGCACUUAAUAACU--CAGCGUUGCUA-------------------GCU ((((((...((((((..(..((((((.(((((((...((..((((....))))..))...)))))))....)).))))..)..))--).)))..))).-------------------))) ( -29.60) >DroPse_CAF1 726 111 + 1 --GCCC--CCGGCGGGCGGAAG-----AGCAGUCAAGUCAAUGUCAAAGGACGAACGGAGGACUGUCAUUUGGCACUUAAUAACUCUCAGCGCUGCUCCCAACCCCACCCCCCCGAUGCU --((..--(.((.(((.((..(-----((((((.........(((....)))(...((((...((((....))))........))))...))))))))......)).))).)).)..)). ( -28.50) >DroSec_CAF1 1035 97 + 1 --UGGGUCUUGCGAGGCGGAAAGUCCCGGCAGUCAAGUCAAUGUCAAAGGACAAGGAGGGGACUGUCAUUUGGCACUUAAUAACU--CAGCGUUGCUA-------------------GCU --..(((..((((((..(..((((((.(((((((...((..((((....))))..))...)))))))....)).))))..)..))--).)))..))).-------------------... ( -29.00) >DroSim_CAF1 1112 97 + 1 --CGGGUCUUGCGAGGCGGAAAGUCCCGGCAGUCAAGUCAAUGUCAAAGGACAAGGAGGGGACUGUCAUUUGGCACUUAAUAACU--CAGCGUUGCUA-------------------GCU --..(((..((((((..(..((((((.(((((((...((..((((....))))..))...)))))))....)).))))..)..))--).)))..))).-------------------... ( -29.00) >DroEre_CAF1 6204 95 + 1 --AGGG--CUGCGAGGCGGAAAGUCCCGACAGUCAAGUCAAUGUCAAAGGACAAGGAGAGGACUGUCAUUUGGCACUUAAUAACU--CAGCGUUGCUA-------------------GCU --..((--((((((.((((......))(((((((...((..((((....))))..))...)))))))..................--..)).)))).)-------------------))) ( -32.70) >DroYak_CAF1 6098 95 + 1 --AGGG--UUGCGAUGCGGAAAGUCCCGACAGUCAAGUCUAUGUCAAAGGACAAGGAGAGGACUGUCAUUUGGCACUUAAUAACU--CAGCGUUGCUA-------------------GCU --..((--(((((((((((......))(((((((...(((.((((....)))).)))...)))))))..................--..))))))).)-------------------))) ( -33.50) >consensus __AGGG__UUGCGAGGCGGAAAGUCCCGACAGUCAAGUCAAUGUCAAAGGACAAGGAGAGGACUGUCAUUUGGCACUUAAUAACU__CAGCGUUGCUA___________________GCU ..........((((.((((......))(((((((...((..((((....))))..))...)))))))......................)).))))........................ (-23.54 = -23.73 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:32 2006