Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 641,863 – 642,002 |
Length | 139 |
Max. P | 0.976369 |
Location | 641,863 – 641,962 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -19.82 |
Energy contribution | -20.35 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.06 |
Mean z-score | -2.71 |
Structure conservation index | 0.81 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 641863 99 + 22224390 GAAUUUUAGUGAAAUUCCUCAAAUUCCU-CCAAAAACCC-----CAAAAACAGGAACUGGUGGCUUCUCCUGGCUACCGUCUUCCUGGUGACCUUCGCCACCCGC ((((((.((.(.....))).))))))..-..........-----.......(((((.((((((((......))))))))..)))))((((.....))))...... ( -25.50) >DroSec_CAF1 7472 91 + 1 GAAUUUUACUGAAAUUCCUC---------CCAAAAACCC-----CAAAAACAGGAACUGGUGGCUUCUUCUGGCCACCGUCUUCCUGGUGACCUUCGCCACACGC (((((((...)))))))...---------..........-----.......(((((.((((((((......))))))))..)))))((((.....))))...... ( -26.50) >DroSim_CAF1 9061 91 + 1 GAAUUUUACUGAAAUUCCUC---------CCAAAAACCC-----CAAAAACAGGAACUGGUGGCUUCUCCUGGCCACCGUCUUCCUGGUGACCUUCGCCACACGC (((((((...)))))))...---------..........-----.......(((((.((((((((......))))))))..)))))((((.....))))...... ( -26.50) >DroEre_CAF1 137 102 + 1 AAAAUGUACUGAAAUUCCUCCAAUUCCAACCAAAAACACGAA---AAAAACAGGAACUGGUGGCUCCUCCUGGCCACCGUCUUCCUGGUGACCUUCGCCACCCGC ......................................((((---.....((((((.((((((((......))))))))..))))))......))))........ ( -23.70) >DroYak_CAF1 142 105 + 1 GAAAUGUACUGAAACUCAUCCCAUUCCUACCAAAAACACAAACUCAACAACAGGAACUGGUGGCUGCUGCUGGCCACCGUCUUCCUGGUGACCUUCGCCACCCGC (.((((...((.....))...)))).)........................(((((.((((((((......))))))))..)))))((((.....))))...... ( -24.40) >DroAna_CAF1 127 93 + 1 --AUUCC----CCACUCCUCUGACUCCU-CUGAAUUCUC-----CUCGGACAGGAACUGGGGUCUCCUUCUGGCCACCGUCUUCCUGAUCACCUUUGCCACCCGA --.....----.........(((....(-((((......-----.)))))((((((.(((((((.......)))).)))..)))))).))).............. ( -19.90) >consensus GAAUUUUACUGAAAUUCCUC__AUUCCU_CCAAAAACCC_____CAAAAACAGGAACUGGUGGCUUCUCCUGGCCACCGUCUUCCUGGUGACCUUCGCCACCCGC ...................................................(((((.((((((((......))))))))..)))))((((.....))))...... (-19.82 = -20.35 + 0.53)
Location | 641,863 – 641,962 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -21.39 |
Energy contribution | -21.92 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.06 |
Mean z-score | -1.47 |
Structure conservation index | 0.69 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 641863 99 - 22224390 GCGGGUGGCGAAGGUCACCAGGAAGACGGUAGCCAGGAGAAGCCACCAGUUCCUGUUUUUG-----GGGUUUUUGG-AGGAAUUUGAGGAAUUUCACUAAAAUUC ...((((((....))))))(((((...(((.((........)).)))..))))).....((-----..((((((.(-((...))).))))))..))......... ( -27.80) >DroSec_CAF1 7472 91 - 1 GCGUGUGGCGAAGGUCACCAGGAAGACGGUGGCCAGAAGAAGCCACCAGUUCCUGUUUUUG-----GGGUUUUUGG---------GAGGAAUUUCAGUAAAAUUC ....(((((....)))))((((((...((((((........))))))..))))))...(((-----..(((((...---------..)))))..)))........ ( -31.60) >DroSim_CAF1 9061 91 - 1 GCGUGUGGCGAAGGUCACCAGGAAGACGGUGGCCAGGAGAAGCCACCAGUUCCUGUUUUUG-----GGGUUUUUGG---------GAGGAAUUUCAGUAAAAUUC ....(((((....)))))((((((...((((((........))))))..))))))...(((-----..(((((...---------..)))))..)))........ ( -31.60) >DroEre_CAF1 137 102 - 1 GCGGGUGGCGAAGGUCACCAGGAAGACGGUGGCCAGGAGGAGCCACCAGUUCCUGUUUUU---UUCGUGUUUUUGGUUGGAAUUGGAGGAAUUUCAGUACAUUUU (((((((((....))))))(((((...((((((........))))))..)))))......---..)))........((((((((.....))))))))........ ( -33.40) >DroYak_CAF1 142 105 - 1 GCGGGUGGCGAAGGUCACCAGGAAGACGGUGGCCAGCAGCAGCCACCAGUUCCUGUUGUUGAGUUUGUGUUUUUGGUAGGAAUGGGAUGAGUUUCAGUACAUUUC ...((((((....))))))..(((((((..((((((((((((..........))))))))).)))..)))))))....((((((...((.....))...)))))) ( -34.40) >DroAna_CAF1 127 93 - 1 UCGGGUGGCAAAGGUGAUCAGGAAGACGGUGGCCAGAAGGAGACCCCAGUUCCUGUCCGAG-----GAGAAUUCAG-AGGAGUCAGAGGAGUGG----GGAAU-- ............(((.(((........))).))).........(((((.(((((((((...-----(......)..-.)))..))).))).)))----))...-- ( -26.70) >consensus GCGGGUGGCGAAGGUCACCAGGAAGACGGUGGCCAGGAGAAGCCACCAGUUCCUGUUUUUG_____GGGUUUUUGG_AGGAAU__GAGGAAUUUCAGUAAAAUUC ....(((((....)))))((((((...((((((........))))))..)))))).................................................. (-21.39 = -21.92 + 0.53)
Location | 641,888 – 642,002 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.59 |
Mean single sequence MFE | -32.83 |
Consensus MFE | -15.30 |
Energy contribution | -16.27 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.15 |
Mean z-score | -2.35 |
Structure conservation index | 0.47 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 641888 114 + 22224390 CCUCCAAAAACCCCAAAAACAGGAACUGGUGGCUUCUCCUGGCUACCGUCUUCCUGGUGACCUUCGCCACCCGCUUCUAUAAGGUCACCGAGCCGGAUCACAUAUGGUAACUGA ...................(((..((((((((((......)))))))((..(((((((((((((.((.....))......))))))))))....)))..))....)))..))). ( -34.30) >DroPse_CAF1 11651 109 + 1 -----AAAAAUCUCUCUUCCAGGCAUUGGUGGAUCCUACUGGCAUCCGUGUUCCUCAUUACUUUUGCCACUCGCUUCUACAAGGUGACCGAACCGGAUCACAUCUGGUAAGGCA -----................((((..(((((((((....)).))))(((.....))).)))..))))..((((((.....))))))((..(((((((...)))))))..)).. ( -29.30) >DroSec_CAF1 7492 111 + 1 ---CCAAAAACCCCAAAAACAGGAACUGGUGGCUUCUUCUGGCCACCGUCUUCCUGGUGACCUUCGCCACACGCUUCUAUAAGGUCACCGAACCGGACCACAUAUGGUAACUGA ---.........((......(((((.((((((((......))))))))..)))))(((((((((.((.....))......))))))))).....))((((....))))...... ( -37.30) >DroSim_CAF1 9081 111 + 1 ---CCAAAAACCCCAAAAACAGGAACUGGUGGCUUCUCCUGGCCACCGUCUUCCUGGUGACCUUCGCCACACGCUUCUAUAAGGUCACCGAACCGGAUCACAUAUGGUAACUGA ---................(((..((((((((((......)))))))((..(((((((((((((.((.....))......))))))))))....)))..))....)))..))). ( -36.60) >DroAna_CAF1 146 114 + 1 CCUCUGAAUUCUCCUCGGACAGGAACUGGGGUCUCCUUCUGGCCACCGUCUUCCUGAUCACCUUUGCCACCCGAUUCUACAAGGUCACCGAACCGGAUCACAUUUGGUAAGUGG ..(((((.......)))))((((((.(((((((.......)))).)))..))))))....(((((((((...(((((.....(((......)))))))).....))))))).)) ( -30.70) >DroPer_CAF1 11651 109 + 1 -----CAAAAUCUCUCUUCCAGGCAUUGGUGGAUCUUACUGGCAUCCGUGUUCCUCAUUACCUUUGCCACUCGCUUCUACAAGGUGACCGAACCGGAUCACAUCUGGUAAGGCA -----................((((..(((((((((....)).))))(((.....))).)))..))))..((((((.....))))))((..(((((((...)))))))..)).. ( -28.80) >consensus ___CCAAAAACCCCAAAAACAGGAACUGGUGGCUCCUACUGGCCACCGUCUUCCUGAUGACCUUCGCCACACGCUUCUACAAGGUCACCGAACCGGAUCACAUAUGGUAACUGA ...................(((((..(((.((((......)))).)))...))))).(((((((................)))))))(((...)))((((....))))...... (-15.30 = -16.27 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:20 2006