Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,041,036 – 5,041,131 |
Length | 95 |
Max. P | 0.507623 |
Location | 5,041,036 – 5,041,131 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -35.87 |
Consensus MFE | -28.35 |
Energy contribution | -28.47 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.16 |
Structure conservation index | 0.79 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5041036 95 - 22224390 GUCUGCAUGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGCUGGCUGGUCUUUAUGGCGGCUGCCACUUCGUU-UUGGCACA-- ...((((((((((((..........)))))))).))))..(((...(((((((((.(((((.((.....))))))))))))))))..-...)))..-- ( -35.20) >DroSec_CAF1 1 92 - 1 GUCUGCACGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGC----GGGGCUUUAUGGCGGCUGCCACUUCGUUUUUGGCACA-- ...((((((((((((..........)))))))).))))..(((...(((((((((----((.(((....)))..)))))))))))......)))..-- ( -35.90) >DroSim_CAF1 1 93 - 1 GUCUGCACGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGC----GGGGCUUUAUGGCGGCUGCCACUUCGUU-UUGGCACAGG ...((((((((((((..........)))))))).))))..(((...(((((((((----((.(((....)))..)))))))))))..-...))).... ( -36.50) >consensus GUCUGCACGGGGAAGCACUUUGCAACUUCCUUGCUGCAAUUGCAAUUGGAGUGGC____GGGGCUUUAUGGCGGCUGCCACUUCGUU_UUGGCACA__ ...((((((((((((..........)))))))).))))..(((...(((((((((.......(((....)))....)))))))))......))).... (-28.35 = -28.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:31 2006