Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,040,195 – 5,040,289 |
Length | 94 |
Max. P | 0.993222 |
Location | 5,040,195 – 5,040,289 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 71.79 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -11.73 |
Energy contribution | -11.97 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -2.35 |
Structure conservation index | 0.56 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5040195 94 + 22224390 ---UUUUUUCCUGCCAAGGAUAUUCU---CUUUUGGCUUUUCAUUAAA-AAGUCUACGCCUAUCGGAGCGUGUAGAUCUUUUAACUACGACUAGUCGCUCG ---.........(((((((.......---.)))))))......(((((-(..(((((((((.....)).)))))))..))))))...(((....))).... ( -22.00) >DroPse_CAF1 136205 83 + 1 ---------------UAGGAUAUUCUCCUCCUUUGGCUUUUCAUUAAA-AAGUCUACGCCUAUCAGACCGUGUAGAUCUUUUAACUACGAAUAGUCCU--A ---------------((((((((((.((......)).......(((((-(..(((((((..........)))))))..))))))....)))).)))))--) ( -20.20) >DroSec_CAF1 105721 97 + 1 UUUUUUUUUCCUGCCAAGGAUAUUCU---CCUUUGGCUUUUCAUUAAA-AAGUCUACGCCUAUCGGAGCGUGUAGAUCUUUUAACUACGACUAGUCGCUCG ............((((((((.....)---)).)))))......(((((-(..(((((((((.....)).)))))))..))))))...(((....))).... ( -24.70) >DroAna_CAF1 106577 81 + 1 UUUUUUUUU--------------------CGGGUGGCUUUUCAUUAAAGAAACCUGUGCCUAUCGGACCGUGCAGAUCUCUUAACUAAGAAUAGUCACUGU .........--------------------..(((((((.(((.(((((((...(((..(..........)..)))...))))...)))))).))))))).. ( -17.40) >consensus ___UUUUUU______AAGGAUAUUCU___CCUUUGGCUUUUCAUUAAA_AAGUCUACGCCUAUCGGACCGUGUAGAUCUUUUAACUACGAAUAGUCGCUCG ..................................((((.(((.(((((...((((((((..........))))))))..)))))....))).))))..... (-11.73 = -11.97 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:30 2006