Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,036,140 – 5,036,260 |
Length | 120 |
Max. P | 0.934954 |
Location | 5,036,140 – 5,036,260 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.52 |
Mean single sequence MFE | -32.97 |
Consensus MFE | -29.14 |
Energy contribution | -29.03 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.89 |
Structure conservation index | 0.88 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5036140 120 + 22224390 ACGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGUGGCACUGUAAAAAUUGUGGGGGCUGGCUACUUGAUGAAAGCCAUCUUGAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA ..(((((((((..(((......(((..(((((((((.((((.(..((.....))..)..)))).)))))).)))..)))......)))..)))))))))..................... ( -31.70) >DroSec_CAF1 101690 117 + 1 UCGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGCGGCACUGCAAAAAUUGUGGGGUCUGGCUACUUG---AAAGCCAUCUUUAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA ..(((((((((...........(((.((....)).)))(((.(..((.....))..).)))(((((.....---..))))).........)))))))))..................... ( -33.60) >DroSim_CAF1 32838 117 + 1 UCGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGCGGCACUGCAAAAAUUGUGGGGGCUGGCUACUUG---AAAGCCAUCUUUAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA ..(((((((((.........(((....)))((((((.((((.(..((.....))..)..)))).)))))).---................)))))))))..................... ( -33.60) >consensus UCGACAUCAUCAAUUCCAAAAUGUUGACGUGAGUGGGCGGCACUGCAAAAAUUGUGGGGGCUGGCUACUUG___AAAGCCAUCUUUAAAAGAUGAUGUCAAUAAAAACAAAAAUCACCGA ..(((((((((.........(((....)))((((((.((((.(..((.....))..)..)))).))))))....................)))))))))..................... (-29.14 = -29.03 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:29 2006