Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,029,350 – 5,029,448 |
Length | 98 |
Max. P | 0.690127 |
Location | 5,029,350 – 5,029,448 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 76.27 |
Mean single sequence MFE | -21.85 |
Consensus MFE | -11.19 |
Energy contribution | -11.30 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.84 |
Structure conservation index | 0.51 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5029350 98 - 22224390 ACUGGAAACUUUGCAAAUGAAUGGCAAGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGCUCGCACA-GAGCGAGAGCUGU-AAAAGUUUUUA ..((((((((((((......(((((....(((((....))))).))))).............(((.(((((...-..))))).)))))-.)))))))))) ( -27.60) >DroPse_CAF1 124522 82 - 1 ACUGGAAACUUUGCAAAUGAAUGGCAGGGCAUUGGAAAUAAUGAGCUGUAUUUACAUUUCAAAGCCCACAGACUCGGGCGAG------------------ ...(....)((((.(((((....((((..(((((....)))))..)))).....)))))))))((((........))))...------------------ ( -21.50) >DroWil_CAF1 101451 86 - 1 ACUGAAAACUUUGCAAAUGAAUGGCAAGGCAUUG-AAAUAAUGAGCCGUAUUUACAUUUCAAAGCAUACAAA-----GCGGCA----ACAAAGCAU---- ........(((((.(((((.(((((....(((((-...))))).))))).....))))))))))........-----(((...----.)...))..---- ( -13.40) >DroYak_CAF1 98522 97 - 1 ACUGGAAACUUUGCAAAUGAAUGGCAAGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGCUUGCACA-G-GCGAGAGCUGU-AAAAGUUUUUA ..((((((((((((......(((((....(((((....))))).))))).............(((.(((((...-.-))))).)))))-.)))))))))) ( -25.40) >DroAna_CAF1 93697 85 - 1 ACUGCAAAGUUCGCAAAUGAAUGGCAGGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGAGC-----------AGAGCGGACAAAAGUU---- .((((...(((((((((((.(((((....(((((....))))).))))).....)))))....))))))-----------...)))).........---- ( -21.70) >DroPer_CAF1 116355 82 - 1 ACUGGAAACUUUGCAAAUGAAUGGCAGGGCAUUGGAAAUAAUGAGCUGUAUUUACAUUUCAAAGCCCACAGACUCGGGCGAG------------------ ...(....)((((.(((((....((((..(((((....)))))..)))).....)))))))))((((........))))...------------------ ( -21.50) >consensus ACUGGAAACUUUGCAAAUGAAUGGCAAGGCAUUGGAAAUAAUGAGCCGUAUUUACAUUUCAAAGCGCACACAC__G_GCGAGA______AAAAGUU____ ........(((((.(((((.(((((....(((((....))))).))))).....)))))))))).................................... (-11.19 = -11.30 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:28 2006