Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,017,175 – 5,017,278 |
Length | 103 |
Max. P | 0.725530 |
Location | 5,017,175 – 5,017,278 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 77.17 |
Mean single sequence MFE | -24.63 |
Consensus MFE | -14.83 |
Energy contribution | -14.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -1.84 |
Structure conservation index | 0.60 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5017175 103 - 22224390 GCGCAAAAAAGAGGGAGAGCGAGAAGCGCGGGGAGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUUAAACGUCUUUU-UUUUGCGUUUUUUUU (((((((((((((.....((.....))(((...((((((((..((((((...........))))))...))))))))...))))))))-))))))))....... ( -28.70) >DroSec_CAF1 83176 94 - 1 GCGCAAAAAAGAGAAAGAUAGA----------GGGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUCUUUUUUUUUGCGUUUUGUUU (((((((...(((((((((...----------.((((((((..((((((...........))))))...))))))))....))))))))))))))))....... ( -24.70) >DroYak_CAF1 84598 92 - 1 GCGCACGAAAGAGA--------GAAGCGCUGAGGAGAAAAACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUUUUU----UUCCGUUUUUUUU ....(((...((((--------((((((.....((((((((..((((((...........))))))...))))))))...)))))))----))))))....... ( -20.50) >consensus GCGCAAAAAAGAGA_AGA__GAGAAGCGC_G_GGGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUCUUUU_UUUUGCGUUUUUUUU ((((((((((((((...................((((((((..((((((...........))))))...)))))))).....)))))).))))))))....... (-14.83 = -14.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:19 2006