Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 640,862 – 640,965 |
Length | 103 |
Max. P | 0.730463 |
Location | 640,862 – 640,965 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 98.71 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -28.37 |
Energy contribution | -28.37 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.98 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 640862 103 + 22224390 GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCCCCA ((((........))))......(((......(((.(((...)))))).(((.(((..(((.......)))..)))...((((.....))))..))).)))... ( -29.40) >DroSec_CAF1 6057 103 + 1 GCCGAAACACUGCGUCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA ((((........(((....(((.(((((...((....))...))))).....(((..(((.......)))..)))...)))....))).......)))).... ( -28.26) >DroSim_CAF1 8105 103 + 1 GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA ((((......((((....)....(((((...((....))...))))).))).(((..(((.......)))..)))...((((.....))))....)))).... ( -29.50) >consensus GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA ((((......((((....)....(((((...((....))...))))).))).(((..(((.......)))..)))...((((.....))))....)))).... (-28.37 = -28.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:16 2006