Locus 181

Sequence ID X_DroMel_CAF1
Location 640,862 – 640,965
Length 103
Max. P 0.730463
window284

overview

Window 4

Location 640,862 – 640,965
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 98.71
Mean single sequence MFE -29.05
Consensus MFE -28.37
Energy contribution -28.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.98
SVM decision value 0.42
SVM RNA-class probability 0.730463
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 640862 103 + 22224390
GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCCCCA
((((........))))......(((......(((.(((...)))))).(((.(((..(((.......)))..)))...((((.....))))..))).)))... ( -29.40)
>DroSec_CAF1 6057 103 + 1
GCCGAAACACUGCGUCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA
((((........(((....(((.(((((...((....))...))))).....(((..(((.......)))..)))...)))....))).......)))).... ( -28.26)
>DroSim_CAF1 8105 103 + 1
GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA
((((......((((....)....(((((...((....))...))))).))).(((..(((.......)))..)))...((((.....))))....)))).... ( -29.50)
>consensus
GCCGAAACACUGCGGCAACAUCGGCACAAUAGCAACAGCAACUGUGCAGCAAGCGUGCAAUUAACUCUUGUGCGCCAAGAUCAAAGCGAUUAAUGCGGCUCCA
((((......((((....)....(((((...((....))...))))).))).(((..(((.......)))..)))...((((.....))))....)))).... (-28.37 = -28.37 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:16 2006