Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,013,297 – 5,013,387 |
Length | 90 |
Max. P | 0.794955 |
Location | 5,013,297 – 5,013,387 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -19.20 |
Consensus MFE | -12.44 |
Energy contribution | -13.33 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.06 |
Mean z-score | -1.94 |
Structure conservation index | 0.65 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5013297 90 + 22224390 CCUCUUGGAGAUGGAGCAACCC-------CAGCCCACAGCUUCGUUUUAUUUCUUUGCUUUUUACUUGAUAUACUCGGGGUUUUCCUCUCCGUUUUU ......(((((.((((.(((((-------((((.....)))..........................((.....)))))))))))))))))...... ( -24.00) >DroEre_CAF1 83778 89 + 1 CCUCUUGCAGAUGGAGCAUCGCAAUCCAC--------AGCUUCGUUUUCUUUCUUUGCUUUUUACUUGAUAUACUCGGGGGCUUACUCUCCGUUUUU ......(((((((((((............--------.)))))))).........))).................((((((.....))))))..... ( -14.12) >DroYak_CAF1 80944 97 + 1 UCUCUUGGAGAUGGAGCAUCCCAUUCAACCAUCCUAAAGCUUCGUGUUUUUUCUUUGCUUUUUACUUGAUAUACUCGGGGUUUUUCACUCCGCUUUU ......((((.(((((.(((((.............(((((................)))))......((.....))))))).)))))))))...... ( -19.49) >consensus CCUCUUGGAGAUGGAGCAUCCCA_UC_ACCA_CC_A_AGCUUCGUUUUAUUUCUUUGCUUUUUACUUGAUAUACUCGGGGUUUUACUCUCCGUUUUU ......(((((((((((.....................)))))))))))..........................(((((.......)))))..... (-12.44 = -13.33 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:16 2006