Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,012,776 – 5,012,883 |
Length | 107 |
Max. P | 0.595816 |
Location | 5,012,776 – 5,012,883 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.51 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -16.26 |
Energy contribution | -16.82 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.71 |
Structure conservation index | 0.70 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595816 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5012776 107 - 22224390 UCUUGAGUGCAAUAAAGAG--------CGAGUGGAACUUACCCCGUGAUUCCAACUCUUUAUAAAGUGUGCUACCCCAACCAUAAUCCAAACACCUUCCAACGAAAAGGAAGAAA .....((..((((((((((--------....(((((.((((...))))))))).))))))))....))..))......................(((((........)))))... ( -23.80) >DroSec_CAF1 78927 107 - 1 GUGUGAGUGCAAUAAAGAG--------CGAGUGGAACUUGCCCCGUGAUUCCAACUCUUUAUAAAGUGUGCUACCCCAACCAUAAUCCAAACACCUUCCAACGAAAAGGAAGAAA ((((.((..((((((((((--------....(((((.(..(...)..)))))).))))))))....))..))..................))))(((((........)))))... ( -24.51) >DroEre_CAF1 83237 106 - 1 C---GAGUGCAAUAAAGAGA------GAGAGUGGAACUUACCCCGUGAGUCCACCUCUUUAUAAAGUGUCCUACCCCAACCAUAAUCCAAACACCUUCCAACGAAAAAGAAGAAA .---.((..((......(((------(((.(((((.(((((...))))))))))))))))......))..))......................((((..........))))... ( -23.40) >DroYak_CAF1 80351 114 - 1 CCUUGAGUGCAAUAAAGAGAGAGAGAGAGAGUGGAACUUACUCCGUGAUUCCAACUCUUUAUAAAGCGUUCUACCCCAACCA-AAUCCAAACACCUUCCACCGAAAAGGAAGAAA ..(((.((.......((((......(((((((((((.((((...)))))))).)))))))........))))......))))-)..........(((((........)))))... ( -21.26) >consensus CCUUGAGUGCAAUAAAGAG________AGAGUGGAACUUACCCCGUGAUUCCAACUCUUUAUAAAGUGUGCUACCCCAACCAUAAUCCAAACACCUUCCAACGAAAAGGAAGAAA .....((..((((((((((............(((((.((((...))))))))).))))))))....))..))......................(((((........)))))... (-16.26 = -16.82 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:15 2006