Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,001,964 – 5,002,057 |
Length | 93 |
Max. P | 0.818834 |
Location | 5,001,964 – 5,002,057 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 95.69 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -20.89 |
Energy contribution | -20.95 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.23 |
Structure conservation index | 0.85 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5001964 93 - 22224390 GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAAGAAGGGGGUUUGUUUUAGUGAGCUGCUUCUUGGUUGUUAAC ............((((.(....).)))).(((((((((..((..((((((((........))))))))..)).))))).)))).......... ( -25.70) >DroSec_CAF1 68476 93 - 1 GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAAAGAGGGGGUUUGUUUUAGUGAGCUGCUUCUUGGUUGUUAAC ............((((.(....).))))....((((((.((......))..((((((.((((..(....)..)))).)))))).))))))... ( -26.40) >DroEre_CAF1 72625 92 - 1 GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGCCGUCAGGGCAAA-GAGGGGGUUUGUUUUAGUGAGCUGGUUCUUGGUUGUUAAC ............((((.(....).))))....(((((((((.....))).((-(((..((((..(....)..))))..))))).))))))... ( -25.30) >DroYak_CAF1 69885 92 - 1 GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAA-GAGGGGGUUUGUUUUAGUGUACUGGUUCUUGGUUGUUAAC ............((((.(....).)))).((((((....(((..((((((((-.......))))))))..)))....)))))).......... ( -21.30) >consensus GUAUAUAAAUUAUAUGGCGAAAGGCAUAAAAGAGCAGCGGCGUCAAGGCAAA_GAGGGGGUUUGUUUUAGUGAGCUGCUUCUUGGUUGUUAAC ............((((.(....).)))).(((((((((..((..((((((((........))))))))..)).)))).))))).......... (-20.89 = -20.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:14 2006