Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,000,407 – 5,000,497 |
Length | 90 |
Max. P | 0.909678 |
Location | 5,000,407 – 5,000,497 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 74.28 |
Mean single sequence MFE | -14.44 |
Consensus MFE | -6.36 |
Energy contribution | -5.84 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.39 |
Mean z-score | -2.04 |
Structure conservation index | 0.44 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5000407 90 + 22224390 UCAA-AACAAUAUAAAUGGACAAACACGUACACAUAACACAUAACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCAAAUA-CA---------- ....-..((((.((((((.((......))............((((((((......)))))))).))))))))))..((....)).....-..---------- ( -13.70) >DroSec_CAF1 66968 83 + 1 UCAA-AACAAUAUAAAUGGACAAACACGUACACAU-------AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCAAAUA-CA---------- ....-..((((.((((((.((......)).....(-------(((((((......)))))))).))))))))))..((....)).....-..---------- ( -13.70) >DroEre_CAF1 71200 84 + 1 UCAAAAACAAUAUAAAUGGACAAACACGUACACAU-------AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCGAAAA-CA---------- ((.....((((.((((((.((......)).....(-------(((((((......)))))))).))))))))))..((....))))...-..---------- ( -13.80) >DroYak_CAF1 68482 83 + 1 UCAA-AACAAUAUAAAUGGGCAAACACGUACACAU-------AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGUAAAUA-CA---------- ....-..((((.((((((.((......)).....(-------(((((((......)))))))).))))))))))...............-..---------- ( -12.70) >DroPer_CAF1 82154 91 + 1 UCCG-UACA--AUAAAUGGUACAGUGUGUGUGUGU--------GUGUGUUUGUUCAUGUGUGAUUAUUUAAUUGAAAAUGAGACAAAAAACAACACUCAAUG ...(-(((.--.......))))....((.((((.(--------((...(((((((((...(((((....)))))...)))).)))))..))))))).))... ( -18.30) >consensus UCAA_AACAAUAUAAAUGGACAAACACGUACACAU_______AACACAUCUUCUCAUGUGUUAACAUUUAAUUGAAGCGCUGGCAAAUA_CA__________ .......((((.((((((.........(....).........(((((((......)))))))..))))))))))............................ ( -6.36 = -5.84 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:14 2006