Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,998,285 – 4,998,383 |
Length | 98 |
Max. P | 0.506547 |
Location | 4,998,285 – 4,998,383 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -25.53 |
Consensus MFE | -17.03 |
Energy contribution | -16.37 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.27 |
Mean z-score | -1.57 |
Structure conservation index | 0.67 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4998285 98 - 22224390 AAGUGCUUUAACGUAUCUCAAAGGAUUCUACGCACAUCCUGACAGGUGGCGCCACCUAGCGCUUUUAAGAUGCGCAAGCUUUGCUAUAAACCGAACUG .(((((((...(((((((.(((((......(((.(.....)..(((((....))))).)))))))).))))))).))))...)))............. ( -22.70) >DroSec_CAF1 64963 98 - 1 AAGUAUUUUAACGAGUCUCAAAGGAUUCUACGCAUGUCCUGACAGGUGGCGCCACCUAGCGCUUUUAAGAUGCGCAAGCUUUGCUAUAAACCGAAUUU ..(((((((((.((((((....))))))..(((..((....))(((((....))))).)))...)))))))))(((.....))).............. ( -24.80) >DroYak_CAF1 66472 98 - 1 AUAUAUUAUAGGGAGCAUCCAUUGGUUCUAUGUAUGUCCUGAUAGGUGGCGCCACCAAGCACUUUUAACAAGUGCAAGCUUUCCUAUAAACCGAACUA .....(((((((((((......((((.((((.(((......))).)))).))))....((((((.....))))))..)).)))))))))......... ( -29.10) >consensus AAGUAUUUUAACGAGUCUCAAAGGAUUCUACGCAUGUCCUGACAGGUGGCGCCACCUAGCGCUUUUAAGAUGCGCAAGCUUUGCUAUAAACCGAACUA ............(((((......)))))...((...........((((....))))..((((.........))))..))................... (-17.03 = -16.37 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:13 2006