Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,990,992 – 4,991,087 |
Length | 95 |
Max. P | 0.941024 |
Location | 4,990,992 – 4,991,087 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -18.80 |
Energy contribution | -18.97 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.17 |
Mean z-score | -2.21 |
Structure conservation index | 0.67 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.941024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4990992 95 - 22224390 AUACAAUUGCAAUUUCCUGGGCUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG--UUACGCACACAGGGAAAAAGGGAGACG-CAGGAGAA ............(((((((.(((((-.(..((((((((..........((((((....)))--))).))))))))..).....)))).).-))))))). ( -31.20) >DroPse_CAF1 74810 91 - 1 ACACAAUUGCACUUUCCCGGCUUCCCGUGUGUGUGUGCACUUUUCAUUUAAAUGCACACGGAAUUACGCA--CGGGAACA-AAUUGCAGG-UGGG---- .(((...((((.(((....(.((((((((((((((((((.(((......))))))))))......)))))--))))))))-)).)))).)-))..---- ( -32.20) >DroSec_CAF1 57830 93 - 1 AUACAAUUGCAAUUUCCUGGACUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG--UUACGCA--CAGGGAAAGAGGGAGACG-CAGGAUGU ..(((.((((..(((((((..(..(-(...(((((((((.((.......)).)))))))))--.)).)..--)))))))....(....))-)))..))) ( -28.10) >DroEre_CAF1 61861 92 - 1 AUACAAUUGCAAUUUCCUGGGCUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACUG--GUACGCA--CAGGGAAA-AAGGAGAGG-UAGGAUGU .(((..((.(..(((((((.((..(-(((...(((((((.((.......)).))))))).)--))).)).--))))))).-..).))..)-))...... ( -22.60) >DroYak_CAF1 59311 93 - 1 AUACAAUUGCAAUUUCCUCGGCUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG--CUACGCA--CAGGGAAA-AGGGAGAUGCCAGGAUGU ........(((.((((((...((((-....(((((((((.((.......)).)))))))))--.......--.))))...-)))))).)))........ ( -24.50) >DroPer_CAF1 69599 91 - 1 ACACAAUUGCACUUUCCCGGCUGCUCGUGUGUGUGUGCACUUUUCAUUUAAAUGCACACGGAAUUACGCA--CGGGAACA-AAUUGCAGG-UGGG---- ...............((((.((((..(((((((((((((.(((......))))))))))......)))))--)(....).-....)))).-))))---- ( -29.70) >consensus AUACAAUUGCAAUUUCCUGGGCUCU_AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG__UUACGCA__CAGGGAAA_AAGGAGAGG_CAGGAUGU ............(((((((...........(((((((((.((.......)).)))))))))...........))))))).................... (-18.80 = -18.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:11 2006