Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,983,658 – 4,983,756 |
Length | 98 |
Max. P | 0.957064 |
Location | 4,983,658 – 4,983,756 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.34 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -17.81 |
Energy contribution | -17.93 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.98 |
Structure conservation index | 0.74 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4983658 98 - 22224390 AAUGCGGCAGCGAAACGAACGGUUGGGGGAAAAUGGUGGGAAAUCGCCGGCUGAGGCCGUGGAAAAAGCCAUGGUUUGAAUGGUUUGAGACUCAGGAA ..(((....)))...(((((.(((...((....((((((....)))))).)).(((((((((......))))))))).))).)))))........... ( -26.60) >DroSec_CAF1 49111 81 - 1 AACG-----------------GUUGGGGGAAAAUUGUGGGAAAUCGCCGGCUGAGGCCGUGGAAAAAGCCAUGGUUUGAAUGGUUGGAGACUCAGGAA ....-----------------............((.((((...((.((((((((((((((((......)))))))))...))))))).)))))).)). ( -23.10) >DroYak_CAF1 51570 80 - 1 AAUG-----------------GGUG-CGGAAAAUGGUGGGAAAUCGCCGGCUGAGGUCGUGGAAUGAGGCAUGGCUCGGAUGGUUUGAGACUCAGGAA ..((-----------------(((.-((((..(((((((....)))))..(((((.(((((........))))))))))))..))))..))))).... ( -22.60) >consensus AAUG_________________GUUGGGGGAAAAUGGUGGGAAAUCGCCGGCUGAGGCCGUGGAAAAAGCCAUGGUUUGAAUGGUUUGAGACUCAGGAA .................................((((((....)))))).((((((((((((......)))))))(((((...)))))..)))))... (-17.81 = -17.93 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:10 2006