Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,980,383 – 4,980,475 |
Length | 92 |
Max. P | 0.999964 |
Location | 4,980,383 – 4,980,475 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 70.86 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -14.45 |
Energy contribution | -14.79 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.25 |
Mean z-score | -1.74 |
Structure conservation index | 0.70 |
SVM decision value | 2.60 |
SVM RNA-class probability | 0.995666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4980383 92 + 22224390 UUUAGAAACUAGUUUUUUUUUUUUUGUUUUGUUGCCUUUGGCUUUAUGCCACUUUGAG------CAAUCGCAAGAGCUAAAGGCACUUGAUGAUUAAG ...................((..(..((..((.((((((((((((.(((......((.------...)))))))))))))))))))..))..)..)). ( -23.30) >DroSec_CAF1 45863 82 + 1 UUUGGAAACUAGUUUUUU----------UUGUUGCCUUCGGCUUUAUAUCACUUUGCG------CAAUCGCAAAGGCCAAAGGCACGUGAUGAUUAUG ...(....)(((((....----------.(((.(((((.(((.........(((((((------....)))))))))).))))))))....))))).. ( -22.00) >DroEre_CAF1 51362 83 + 1 UUUAGAAACUACUUUUU------------UUUUGCCUUUGGCUGUAUACCAAUUUGUGUUCCGACAAUGGAAAGGGCCGAAAGCACUCG---AUUAAG ...........(((..(------------(..(((.(((((((.(...(((..((((......)))))))..).))))))).)))...)---)..))) ( -16.60) >consensus UUUAGAAACUAGUUUUUU__________UUGUUGCCUUUGGCUUUAUACCACUUUGAG______CAAUCGCAAGGGCCAAAGGCACUUGAUGAUUAAG ................................(((((((((((((........(((........))).....)))))))))))))............. (-14.45 = -14.79 + 0.34)
Location | 4,980,383 – 4,980,475 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 70.86 |
Mean single sequence MFE | -19.63 |
Consensus MFE | -11.87 |
Energy contribution | -13.10 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.19 |
Mean z-score | -2.82 |
Structure conservation index | 0.60 |
SVM decision value | 4.94 |
SVM RNA-class probability | 0.999964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4980383 92 - 22224390 CUUAAUCAUCAAGUGCCUUUAGCUCUUGCGAUUG------CUCAAAGUGGCAUAAAGCCAAAGGCAACAAAACAAAAAAAAAAAAACUAGUUUCUAAA .............(((((((.(((..(((.(((.------.....))).)))...))).)))))))................................ ( -19.10) >DroSec_CAF1 45863 82 - 1 CAUAAUCAUCACGUGCCUUUGGCCUUUGCGAUUG------CGCAAAGUGAUAUAAAGCCGAAGGCAACAA----------AAAAAACUAGUUUCCAAA .............(((((((((((((((((....------))))))).........))))))))))....----------.................. ( -24.40) >DroEre_CAF1 51362 83 - 1 CUUAAU---CGAGUGCUUUCGGCCCUUUCCAUUGUCGGAACACAAAUUGGUAUACAGCCAAAGGCAAAA------------AAAAAGUAGUUUCUAAA ......---.((.((((((..(((..((((......))))......(((((.....))))).)))....------------..)))))).))...... ( -15.40) >consensus CUUAAUCAUCAAGUGCCUUUGGCCCUUGCGAUUG______CACAAAGUGGUAUAAAGCCAAAGGCAACAA__________AAAAAACUAGUUUCUAAA .............((((((((((...(((.(((............))).)))....))))))))))................................ (-11.87 = -13.10 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:09 2006