Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 639,252 – 639,372 |
Length | 120 |
Max. P | 0.521664 |
Location | 639,252 – 639,372 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -48.39 |
Consensus MFE | -31.76 |
Energy contribution | -33.48 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.66 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 639252 120 + 22224390 CUACGCACCGGGAUUUGUGGAGCUGCCAGCACUGGUCCUGCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCUCUGCUCUCCCUGCAGCAACAGUUGCAGCCCACCCUGGC .......(((((....(((((((.((((....))))...))))).)).(((((((((((.......((((.((....))))))(((((.....).))))..)).))))))))).))))). ( -45.80) >DroPse_CAF1 6710 120 + 1 CUCGGCCCCCGGAUUCGUGGAGCUGCCCGCCCUGGUGCUGCUCCUCCUGGGGCUGUACUUUACGCUGCGCGCCUCCCGCUCCCUGCACUCGCUGCAGCAGCAGCUCCAGCCCACGCUGGC ..(((((((.(((.....(((((.((((.....)).)).)))))))).)))))))........((((((((.....)))...(((((.....)))))..))))).(((((....))))). ( -54.70) >DroSec_CAF1 4450 120 + 1 CUACGCACCGGGAUUCGUGGAGCUGCCAGCACUGAUCCUCCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCUCUGCUCUUCCUGCAGCUGCAGUUGCAGCCCACCCUGGC .......(((((....((((.(((((.((((..((.(((.......((..((.((.....)).))..)).......)))))..))))....((((....))))..)))))))))))))). ( -42.54) >DroSim_CAF1 6478 120 + 1 CUACGCACCGGGAUUCGUGGAGCUGCCAGCACUGGUCCUCCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCCCUGCUCUUCCUGCAGCUGCAGUUGCAGCCCACCCUGGC .......(((((....(.((((..((((....)))).)))).).....(((((((((.........((((((....((....)))))))).((((....)))).))))))))).))))). ( -44.20) >DroPer_CAF1 6922 120 + 1 CUCGGCCCCCGGAUUCGUGGAGCUGCCCGCCCUGGUGCUGCUCCUCCUGGGGCUGUACUUUACGCUGCGCGCCUCCCGCUCCCUGCACUCGCUGCAGCAGCAGCUCCAGCCCACGCUGGC ..(((((((.(((.....(((((.((((.....)).)).)))))))).)))))))........((((((((.....)))...(((((.....)))))..))))).(((((....))))). ( -54.70) >consensus CUACGCACCGGGAUUCGUGGAGCUGCCAGCACUGGUCCUGCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCCCUGCUCUCCCUGCAGCAGCAGUUGCAGCCCACCCUGGC .......(((((......(((((.(((......)))...))))).....((((((((((....((((........))))...((((.......))))....)).))))))))..))))). (-31.76 = -33.48 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:14 2006