Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 45,450 – 45,541 |
Length | 91 |
Max. P | 0.991120 |
Location | 45,450 – 45,541 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 69.28 |
Mean single sequence MFE | -19.09 |
Consensus MFE | -12.20 |
Energy contribution | -12.76 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.92 |
Structure conservation index | 0.64 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 45450 91 - 22224390 GUGCGUUAAA--AAUGGC---------------------AACAUAAAGCUAACAAUAACCAAAACCUAAAA-----AAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU (((.(((...--((((((---------------------.......(((((.((((...............-----.....)))).)))))...((....)))))))).)))))).... ( -14.35) >DroSec_CAF1 32046 114 - 1 GUGUUUUAACGCACUAGUGCGUUAAAAUAAAAUAA----UACAUAAAGCUACCAAUACCCAAUACCUAAAAA-AAAAAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU .((((((((((((....))))))))))))......----.......((((((((((................-........)))))))))).((((....))))............... ( -27.46) >DroSim_CAF1 32546 113 - 1 AUGCGUUAAA--AAUAGUGCGUUAAAAUAAAAUAA----UACAUAAAGCUACCAAUACCCAAUACCUAAAAAAAAAAAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU ..........--....(((..((((..........----.......((((((((((.........................)))))))))).((((....))))..))))..))).... ( -17.31) >DroEre_CAF1 14139 85 - 1 GUGUGUAAGA-----------------------AAUGGCAACAAAAAGCAAUCAAUAC-------CUAC----AAAAUUCGAUUGAUGGCUGACGAGCUCUCGUCAUUGAAUCACGUUU (((..(((..-----------------------..((....))...(((.((((((..-------....----........)))))).)))(((((....))))).)))...))).... ( -17.24) >consensus GUGCGUUAAA__AAUAGU_______________AA____AACAUAAAGCUACCAAUACCCAAUACCUAAAA__AAAAAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU (((..((((.....................................((((((((((.........................)))))))))).((((....))))..))))..))).... (-12.20 = -12.76 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:24 2006