Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,975,500 – 4,975,615 |
Length | 115 |
Max. P | 0.703668 |
Location | 4,975,500 – 4,975,615 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.03 |
Mean single sequence MFE | -18.85 |
Consensus MFE | -16.20 |
Energy contribution | -16.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.86 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4975500 115 + 22224390 UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAGCGUCUUCACAUUUCCUUCAGUUUUCCCCAGGCUUUCUUCCACAGCUUUCCCCGCAUUU-UUCCUAGCCCUU ...(.(((((((.((((........))))..))))))).)..................................((((..........((.......))....-.....))))... ( -21.21) >DroSec_CAF1 41078 102 + 1 UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAGCGUCUUCACAUUUCCCUCAGUUUUCCCCAGGCCUUCU-------------CCGCACUU-UUCCUAUCCCUA ..(((((((.(((.((((..((.........))))))(.((....)).).........................)))....)-------------))).))).-............ ( -18.30) >DroEre_CAF1 46649 113 + 1 UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGACAUCGUCUUCACGUUUCCUUCAGUUUUUCCCAGGUUUUC---CACAGCUUUCCCCGCAUUUUUUCCUAUCCCUU ...(.(((((((.((((........))))..))))))).)(((...))).........................((....)---)...((.......))................. ( -18.50) >DroYak_CAF1 43211 91 + 1 UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAUCGUCUUCACAUUUCCUCAACUUUUCCCCUGGUUUUC---C----------------------CCAUCCCUU ...(.(((((((.((((........))))..))))))).).................................(((.....---.----------------------)))...... ( -17.40) >consensus UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAGCGUCUUCACAUUUCCUUCAGUUUUCCCCAGGCUUUC___C__________CCGCAUUU_UUCCUAUCCCUU ...(.(((((((.((((........))))..))))))).)............................................................................ (-16.20 = -16.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:04 2006