Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,968,613 – 4,968,705 |
Length | 92 |
Max. P | 0.858516 |
Location | 4,968,613 – 4,968,705 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 81.73 |
Mean single sequence MFE | -20.71 |
Consensus MFE | -15.96 |
Energy contribution | -17.15 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.89 |
Structure conservation index | 0.77 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4968613 92 + 22224390 CCAGCAGGAUAUAUAGAAUCCAGGAUACUGGAUUUAGGAUCCAGCAGUUUCGAGCUGCCAAA--AACAAAUACGGCAAACUGACUGAACAAACA----------- .(((((((((...(.((((((((....)))))))).).)))).(((((.....)))))....--................)).)))........----------- ( -24.30) >DroSec_CAF1 34405 96 + 1 CCAGCAGGAUAUAUAGAAUCCAGG-------AUUUAGGAUCCAGCAGUUUCGAGCUGCCAAA--AACAAAUACGGCAAACUGACUGAACAAACAGAAAAACAAGU ...((.((((.......)))).((-------(((...))))).(((((.....)))))....--..........)).......(((......))).......... ( -16.70) >DroEre_CAF1 35301 105 + 1 CCAGCAGGAUAUAAAGAGUCUAGGAUUCUGGAUUUAGGAUCCAGCAGUUUUGAGCUGCCAAAAAAACAAAUACGGCAAACUGACUGAACAAACAGAAAAAUAAGU .((((((.........((..((((((((((((((...))))))).)))))))..))(((..............)))...))).)))................... ( -23.64) >DroYak_CAF1 36419 94 + 1 CCAGCAGGAUAUAUAGAAACCAGGAGUCUGGAUUUAGAAUCCAGCCGUUUCGAGCUGCCAAA--AACAAAUACGGCAAACUGA---------CAGAAAAAUAAGU ...((((........(((((..((...((((((.....)))))))))))))....((((...--.........))))..))).---------)............ ( -18.20) >consensus CCAGCAGGAUAUAUAGAAUCCAGGAUUCUGGAUUUAGGAUCCAGCAGUUUCGAGCUGCCAAA__AACAAAUACGGCAAACUGACUGAACAAACAGAAAAAUAAGU ...((.((((.....((((((((....))))))))...)))).(((((.....)))))................))............................. (-15.96 = -17.15 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:02 2006