Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,952,052 – 4,952,150 |
Length | 98 |
Max. P | 0.968309 |
Location | 4,952,052 – 4,952,150 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.29 |
Mean single sequence MFE | -23.05 |
Consensus MFE | -19.19 |
Energy contribution | -19.58 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.09 |
Mean z-score | -3.14 |
Structure conservation index | 0.83 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4952052 98 + 22224390 GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAGCAGCAAUCCACU--------CCACCCUUUUUUU-------- ...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).((....))........--------.............-------- ( -25.10) >DroSec_CAF1 16642 93 + 1 GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAG-AGCAACCCACU--------ACACCCUUU------------ ...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).....-...........--------.........------------ ( -23.90) >DroSim_CAF1 11056 94 + 1 GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAG-AGCAACCCACU--------ACACCCUUU---U-------- ...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).....-...........--------.........---.-------- ( -23.90) >DroEre_CAF1 19080 106 + 1 GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGGCAAGCCAGGGGACUGGCAGU------AACCCACUAGCGCUCUCCACCCCUUUUC-CUUUUUU- ....(((((((..((((...((((((.....))))))))))..)))))))((..(((((....)))))(((------.....))).)).................-.......- ( -24.60) >DroYak_CAF1 18493 108 + 1 GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGACAGC------AACCCACUAGCGCUCUCCACCCUUUUUUUCUUUCUUG ...((((((((..((((...((((((.....))))))))))..))))))))......(((((...((.(((------...........))).))..)))))............. ( -19.30) >DroAna_CAF1 20791 99 + 1 GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAAGGGACAGCUCG--------UCCCAC----GCUCUUAUCCCUUU-UC-CCUUUUU- ...((((((((..((((...((((((.....))))))))))..))))))))..(((...(((((.....)--------))))..----)))...........-..-.......- ( -21.50) >consensus GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGC______AACCCACU________CCACCCUUU_U__________ ...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).............................................. (-19.19 = -19.58 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:58 2006