Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,936,560 – 4,936,658 |
Length | 98 |
Max. P | 0.548193 |
Location | 4,936,560 – 4,936,658 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.41 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -15.15 |
Energy contribution | -16.27 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.12 |
Mean z-score | -1.62 |
Structure conservation index | 0.66 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4936560 98 + 22224390 CCCAACAUCAAGCGAACAGUCACCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGAGCAAAAAAGGAAGA--UUCAUAAAU-AAAAU .((...............((((((....))))))..(((((..((.(((((.......))))).)).)).))).....))....--.........-..... ( -24.40) >DroSim_CAF1 1838 90 + 1 C-CAACAUUAAGCGAACA-UCACCGCCAGG-GGCG-UGCCGCUGAGU--GGAAAGGUAUCCGAGUUCG--GCAA-AAAGGGAAA--UUCAUAAAUUAAAAU (-(.........(((((.-((.(((((((.-((..-..)).))).))--))...((...)))))))))--....-....))...--............... ( -21.73) >DroEre_CAF1 10911 93 + 1 CCCAACAUCAACCAAACAGUCAUCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGGGCAAAAAUAA-------AAAUAAAU-ACAAU ..................((((((....))))))..((((...((.(((((.......))))).))...)))).......-------........-..... ( -21.30) >DroYak_CAF1 10363 100 + 1 CCCAACAUCAACCAAACAGUCACCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGGGCAAAAAAAGAAAAAGUAAAUAAAU-ACAAU .......((.........((((((....))))))..((((...((.(((((.......))))).))...))))......))....(((......)-))... ( -24.50) >consensus CCCAACAUCAACCAAACAGUCACCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGGGCAAAAAAAGAAAA__UAAAUAAAU_AAAAU ..................((((((....))))))..((((...((.(((((.......))))).))...))))............................ (-15.15 = -16.27 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:53 2006