Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,920,711 – 4,920,808 |
Length | 97 |
Max. P | 0.788588 |
Location | 4,920,711 – 4,920,808 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 87.09 |
Mean single sequence MFE | -16.45 |
Consensus MFE | -13.42 |
Energy contribution | -14.99 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.75 |
Structure conservation index | 0.82 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4920711 97 - 22224390 UGCGGAAAGAUAUGCAUAUAUGUAUGAACCAUAUCUUUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA---ACCUAAUCAAAACAAAAAAAAAA .(((((((((((((((((....))))...))))))))))))).......(((.((.........)).)))....---....................... ( -21.80) >DroSec_CAF1 7388 93 - 1 UGCGGAAAGAUAUGCAU--AUGUAUGAACCAUAUCUUUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA---ACCUAAUCAAAACAAAAA--AGA .((((((((((((((((--....)))...))))))))))))).......(((.((.........)).)))....---..................--... ( -20.40) >DroEre_CAF1 7150 85 - 1 UUCGGAAAGAUUU------ACGUAUGAACCAUAUC--UCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA---ACCUAAUCAAAACAAAA----AA .((((...(((..------..(((((...))))).--...)))..))))(((.((.........)).)))....---.................----.. ( -10.20) >DroYak_CAF1 7157 89 - 1 UGCGGAAAGGUAU------AUGUAUGAACCAUAUCUCUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAAACAACCUAAUCAAAUCAAA-----AA .(((((.((((((------..((....)).)))))).))))).......(((.((.........)).))).......................-----.. ( -13.40) >consensus UGCGGAAAGAUAU______AUGUAUGAACCAUAUCUUUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA___ACCUAAUCAAAACAAAA____AA .(((((((((((((...............))))))))))))).......(((.((.........)).))).............................. (-13.42 = -14.99 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:46 2006