Locus 1782

Sequence ID X_DroMel_CAF1
Location 4,912,581 – 4,912,671
Length 90
Max. P 0.988886
window2911

overview

Window 1

Location 4,912,581 – 4,912,671
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 72.33
Mean single sequence MFE -30.98
Consensus MFE -12.62
Energy contribution -13.70
Covariance contribution 1.08
Combinations/Pair 1.43
Mean z-score -2.32
Structure conservation index 0.41
SVM decision value 2.14
SVM RNA-class probability 0.988886
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4912581 90 - 22224390
ACUCCUCGGCGGUGAUCUCGGUCAUUUCUGGCUUGAGCUCGCUAAAGAGCUCUGGCUUGACCGUCACGUCCAUGGACACCAUCUCGACGA
..((.((((.((((....((((((.....((((.((((((......)))))).))))))))))....(((....)))..)))))))).)) ( -35.00)
>DroSec_CAF1 63404 90 - 1
ACUCCUCGGCGGUGAUCUCGGUCAUUUCUGGCUUGAGCUCGUUAAAGAGCUCUGGCUUGACCGUCACGUCCAUGGACACCAUCUCGACGA
..((.((((.((((....((((((.....((((.((((((......)))))).))))))))))....(((....)))..)))))))).)) ( -35.00)
>DroEre_CAF1 66580 90 - 1
ACUCCUCGGUGGUGAUCUCGGUCACUUCUGUCUUGGUGUCGUUAAGGGGCUCUGGCUUCACCAUCACAUCCAUCGACACCAUCUCGACGA
.......((.((((((....)))))).))(((.((((((((....(((....(((.....))).....)))..))))))))....))).. ( -27.70)
>DroYak_CAF1 64382 90 - 1
GCUCGUCGGUGGUGAUCUCGGUCAUUUCGGUUUUUGCUUCGUUAAAUGGCUCUGGCUUGACCGUCACAUCCAUCGACACCAUCUCGACGA
....((((((((......((((((..((((.....(((.........))).))))..))))))......))))))))............. ( -29.30)
>DroAna_CAF1 125549 69 - 1
ACUCCACGGUGGUCAUCUUGGCCAGCUCUGGCUUCUGUUCGGACUCUGGUUCGGGCUUGAUCGCCAGG---------------------C
.......((((((((....(((((....)))))...((((((((....)))))))).))))))))...---------------------. ( -27.90)
>consensus
ACUCCUCGGUGGUGAUCUCGGUCAUUUCUGGCUUGAGCUCGUUAAAGGGCUCUGGCUUGACCGUCACGUCCAUCGACACCAUCUCGACGA
.......(((((((((....))))..((.((((.((((((......)))))).)))).)))))))......................... (-12.62 = -13.70 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:45 2006