Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,900,391 – 4,900,508 |
Length | 117 |
Max. P | 0.523928 |
Location | 4,900,391 – 4,900,508 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.76 |
Mean single sequence MFE | -33.23 |
Consensus MFE | -28.83 |
Energy contribution | -29.59 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4900391 117 + 22224390 AGGUGCAGAUAUAUGCGCAACUGACUGUGAGCUUGAUCAGUUUGUCAAUGGCUGCGUUUGUCAAGCCGAAAGCUGGGGGAAAAAAAAACAAACCAGUUCAGAGGUGCA---GCCUCAGCC ..(((((......)))))..((((..(..((((.....))))..)....(((((((.....)..(((...((((((.(..........)...))))))....))))))---))))))).. ( -32.30) >DroSec_CAF1 51280 113 + 1 AGGUGCAGAUAUAUGCGCAACUGACUCUGAGCUUGAUCAGUUUGUCAAUGGCUGCGUUUGUCAAGCCGAAAGCUGGGGAAAAA-------AACCAGUUCAGAGGUGCAGCAGCCUCAGCC .(((...((((.((((((...((((.((((......))))...))))...)).)))).))))..)))....(((((((.....-------.(((........))).......))))))). ( -38.52) >DroEre_CAF1 54377 103 + 1 AGGUGCAGAUAUAUGCGCAACUGACUGUGAGCUUGAUCAGUUUGUCAAUGGCUGCGUUUGUCAAGCCGAAAGCUGGGAAA-AA-------AACCAGUUCAGAGGUGCA---------GCC ..(((((......)))))..(((.((.(((((((((((((((.......))))).....))))))).....(((((....-..-------..)))))))).))...))---------).. ( -31.90) >DroYak_CAF1 52354 97 + 1 ---------UAUAUGCGCAACUGACUGUGAGCUUGAUCAGUUUGUCAAUGGCUGCGUUUGUCAAGCCGAAAGCUGGGGAA-AA-------AACCAGUUCAGAGGUGCAGC------AGCG ---------....(((((..((((...((.((((((((((((.......))))).....)))))))))...(((((....-..-------..)))))))))..)))))..------.... ( -30.20) >consensus AGGUGCAGAUAUAUGCGCAACUGACUGUGAGCUUGAUCAGUUUGUCAAUGGCUGCGUUUGUCAAGCCGAAAGCUGGGGAA_AA_______AACCAGUUCAGAGGUGCA________AGCC .(((.........(((((..((((...((.((((((((((((.......))))).....)))))))))...(((((................)))))))))..))))).........))) (-28.83 = -29.59 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:42 2006