Locus 178

Sequence ID X_DroMel_CAF1
Location 637,668 – 637,765
Length 97
Max. P 0.851069
window281

overview

Window 1

Location 637,668 – 637,765
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 67.71
Mean single sequence MFE -20.32
Consensus MFE -11.36
Energy contribution -10.92
Covariance contribution -0.44
Combinations/Pair 1.19
Mean z-score -1.67
Structure conservation index 0.56
SVM decision value 0.79
SVM RNA-class probability 0.851069
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 637668 97 + 22224390
---AACUGGCGGCAUUUUC---GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCAAACA-------AAGCAACUUGUGA-GAU--UAGUAAUGAAAA--AUAUACAAGAAA-----AG
---...((((((.....))---)))).(((((((....(((....))))))))))......-------......((((((.-..(--((....)))...--...))))))...-----.. ( -22.60)
>DroPse_CAF1 4417 120 + 1
UGCCAUUUGAAACGUUUUCUUUCUUAUGUGUGAAAUCUGACGCAAGUUUUCACACCAAACAUUCAUUCACACACAUCGUAAUGAUCAAAGGAAUGGAAACAACAAACAACAAGAAGCAUG
(((..((((......(((((((.....(((((((....(((....)))))))))).......(((((.((.......)))))))..)))))))((....))........))))..))).. ( -23.30)
>DroSec_CAF1 2896 81 + 1
----------------------GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCCAACA-------AAGCAACUUGUGA-GAU--UAGUAAUGGAAA--AUAAACAAGAAA-----UU
----------------------.(((((((((((....(((....))))))))))...(((-------(......))))..-...--.....))))...--............-----.. ( -15.70)
>DroSim_CAF1 4921 81 + 1
----------------------GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCCAACA-------AAGCAACUUGUGA-GAU--UAGUAAUGGAAA--AUAAACAAGAAA-----UG
----------------------.(((((((((((....(((....))))))))))...(((-------(......))))..-...--.....))))...--............-----.. ( -15.70)
>DroPer_CAF1 4591 120 + 1
UGCCAUUUGAAGCGUUUUCUUUCUUAUGUGUGAAAUCUGACGCAAGUUUUCACACCAAACAUUCAUUCACACACAUCGUAAUGAUCAAAGGAAUGGAAACAACAAACAACAAGAAGCAUG
(((..((((..(((((...((((........))))...)))))..(((((((..((......(((((.((.......))))))).....))..))))))).........))))..))).. ( -24.30)
>consensus
____A_U_G___C_UUUUC___GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCAAACA_______AAGCAACUUGUGA_GAU__UAGUAAUGGAAA__AUAAACAAGAAA_____UG
.......................(((((((((((....(((....))))))))))...............((.....)).............))))........................ (-11.36 = -10.92 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:11 2006