Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,899,992 – 4,900,098 |
Length | 106 |
Max. P | 0.930717 |
Location | 4,899,992 – 4,900,098 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 84.90 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -22.64 |
Energy contribution | -22.45 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.06 |
Structure conservation index | 0.84 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4899992 106 - 22224390 ---------AACCCGGAGAGAUUUGCAUAAAUUGUAAAUUUUUGUGUGUCGAUUUUAAUGGCUGCAAAGUGUGGUCACCGUAUUUUGCAUUUUCGGG-GAAAGGAAGGAAAAUUAU ---------..(((((((((((..(((((((.........))))))))))............((((((((((((...))))))))))))))))))))-.................. ( -27.20) >DroSec_CAF1 50897 99 - 1 -----------CCCGGAGAGAUUUGCAUAAAUUGUAAAUU--UGUGUGUCGAUUUUAAUGGCUGCAAAGUGUGGUCAUCGUAUUUUUGAUUUUCGGG-GAAA---AGGAAAUUUAU -----------((((((((((((((((.....))))))))--)....(((((.....(((((..(.....)..))))).......))))))))))))-....---........... ( -25.80) >DroEre_CAF1 54004 99 - 1 ---------UACCCGGAGAGAUUUGCAUAAAUUGUAAAUU--UGUGUGUCGAUUUUAAUGGCUGCAAAGUGUGGUCACCGUAUUUCGCAUUUUCGGG-GAAG---UGGAAAUUA-- ---------..((((((((((((((((.....))))))))--)..(((.(((......((((..(.....)..)))).......)))))))))))))-....---.........-- ( -27.02) >DroYak_CAF1 51950 109 - 1 UUUAUUUUGUACCCGGAGAAAUUUGCAUAAAUUGUAAAUU--UGUGUGUCGAUUUUAAUGGCUGCAAAGUGUGGUCACCGUAUUUCGCAUUUUCGGGGGAAA---UCUAAAAUA-- ((((..((...((((((((((((((((.....))))))))--)..(((.(((......((((..(.....)..)))).......)))))))))))))...))---..))))...-- ( -27.52) >consensus _________UACCCGGAGAGAUUUGCAUAAAUUGUAAAUU__UGUGUGUCGAUUUUAAUGGCUGCAAAGUGUGGUCACCGUAUUUCGCAUUUUCGGG_GAAA___AGGAAAAUA__ ...........((((((((((((((((.....))))))))..................((((..(.....)..))))............))))))))................... (-22.64 = -22.45 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:41 2006