Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,893,574 – 4,893,691 |
Length | 117 |
Max. P | 0.518888 |
Location | 4,893,574 – 4,893,691 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 97.15 |
Mean single sequence MFE | -12.92 |
Consensus MFE | -10.22 |
Energy contribution | -12.05 |
Covariance contribution | 1.83 |
Combinations/Pair | 1.00 |
Mean z-score | -2.51 |
Structure conservation index | 0.79 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4893574 117 + 22224390 AAAGACCAAAGCAAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAUCAAUAUAGUAAUAUAUUGAAUUACAUCCAUACAAAACAGA .................................((((((((....................)))))))).......((((((((....))))))))..................... ( -13.45) >DroSec_CAF1 44712 117 + 1 AAAGACCAAAGCCAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAAA .................................((((((((....................))))))))........(((((((....)))))))...................... ( -12.25) >DroSim_CAF1 45956 117 + 1 AAAGACCAAAGCCAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAGA ............................................................((((.(((((.......(((((((....)))))))...........))))).)))). ( -13.07) >consensus AAAGACCAAAGCCAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAGA .................................((((((((....................))))))))........(((((((....)))))))...................... (-10.22 = -12.05 + 1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:39 2006