Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,891,983 – 4,892,099 |
Length | 116 |
Max. P | 0.902461 |
Location | 4,891,983 – 4,892,079 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 70.34 |
Mean single sequence MFE | -17.91 |
Consensus MFE | -7.02 |
Energy contribution | -7.70 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.15 |
Mean z-score | -1.91 |
Structure conservation index | 0.39 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4891983 96 - 22224390 GGUGAGAGAGGUGCACCAUAAGAAAUUAGUGCGCUGCCCCUUCAAA--ACUUAAUAGAAUAAUAACAUAAAACU----------------GAGGAUCAACUUAAUCCUUUUUUU-- ((.(.(...(((((((..(((....)))))))))).))))......--.....................(((..----------------((((((.......))))))..)))-- ( -16.90) >DroSec_CAF1 43101 92 - 1 GGUGAGAGAGGUGCACCAUAAGAAAUUGGUG--CUGCCUUUUAAAA--ACCUAAAAGAAGAAUAAAAUAAGACA----------------GA-GAUCAACUAAAUACUUU-UAU-- (((..(((((((((((((........)))))--).)))))))....--))).......................----------------..-.................-...-- ( -20.70) >DroSim_CAF1 44327 93 - 1 GGUGAGAGAGCUGCACCAUAAGAAAUUGGUG--CUGCCUUUUAAAA--ACCUAAAAGAAGAAUAAAAUAAGACA----------------GA-AAUCAACUUAAUACUUUUUCU-- ((((((((.((.((((((........)))))--).)))))))....--)))....(((((((.....((((...----------------..-......))))....)))))))-- ( -21.00) >DroEre_CAF1 46000 76 - 1 GGUGAGAGAGGUGCACUAUAAGAAAAAAGUG--CUGCCUUUUCAGA--UCAUAAUAAAAGGAAAACA-----------------------------------AACACUUUUUAU-G .((((((((((((((((..........))))--).)))))))....--)))).((((((((......-----------------------------------....))))))))-. ( -17.30) >DroYak_CAF1 44060 113 - 1 GGUGAGAGAGGUGCACCAUAAGAAAAUAGUG--CUGCCUUUUCAGAUAUCGUAAUAAAAGAAAAACAUAAGAAAUAAGAAAUAAUAAUAUGA-AAUAAACCUAAUACUUUUCUUCU ((((.(((((((((((.((......)).)))--).)))))))....)))).......(((((((..((.((.........(((....)))..-.......)).))..))))))).. ( -13.67) >consensus GGUGAGAGAGGUGCACCAUAAGAAAUUAGUG__CUGCCUUUUCAAA__ACCUAAUAGAAGAAUAACAUAAGACA________________GA_AAUCAACUUAAUACUUUUUAU__ .....(((((((((((((........)))))...)))))))).......................................................................... ( -7.02 = -7.70 + 0.68)
Location | 4,892,007 – 4,892,099 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.90 |
Mean single sequence MFE | -21.94 |
Consensus MFE | -10.48 |
Energy contribution | -11.12 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.07 |
Mean z-score | -3.02 |
Structure conservation index | 0.48 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4892007 92 - 22224390 AAAACGAAGCCUCGUUCGCAGGUGAGAGAGGUGCACCAUAAGAAAUUAGUGCGCUGCCCCUUCAAA--ACUUAAUAGAAUAAUAACAUAAAACU-- .....((((.(((.((((....)))).)))((((((..(((....))))))))).....))))...--..........................-- ( -18.00) >DroSec_CAF1 43123 90 - 1 AAAACGAAGCCUCGUUCGCAGGUGAGAGAGGUGCACCAUAAGAAAUUGGUG--CUGCCUUUUAAAA--ACCUAAAAGAAGAAUAAAAUAAGACA-- ..(((((....)))))...((((..(((((((((((((........)))))--).)))))))....--))))......................-- ( -24.80) >DroSim_CAF1 44350 90 - 1 AAAACGAAGCCUCGUUCGCAGGUGAGAGAGCUGCACCAUAAGAAAUUGGUG--CUGCCUUUUAAAA--ACCUAAAAGAAGAAUAAAAUAAGACA-- ..(((((....)))))...(((((((((.((.((((((........)))))--).)))))))....--))))......................-- ( -22.60) >DroEre_CAF1 46013 83 - 1 AAAACGAAGCCUCUUUCGCAGGUGAGAGAGGUGCACUAUAAGAAAAAAGUG--CUGCCUUUUCAGA--UCAUAAUAAAAGGAAAACA--------- ........((((((((((....))))))))))(((((..........))))--)..((((((....--.......))))))......--------- ( -22.30) >DroYak_CAF1 44099 94 - 1 AAAACGAAGCCUCUUUCGCAGGUGAGAGAGGUGCACCAUAAGAAAAUAGUG--CUGCCUUUUCAGAUAUCGUAAUAAAAGAAAAACAUAAGAAAUA ...((((.((((((((((....))))))))))((((.((......)).)))--)..............))))........................ ( -22.00) >consensus AAAACGAAGCCUCGUUCGCAGGUGAGAGAGGUGCACCAUAAGAAAUUAGUG__CUGCCUUUUCAAA__ACCUAAUAGAAGAAUAACAUAAGACA__ ........(((((.((((....)))).))))).(((((........)))))............................................. (-10.48 = -11.12 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:38 2006