Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,889,668 – 4,889,774 |
Length | 106 |
Max. P | 0.685614 |
Location | 4,889,668 – 4,889,774 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 73.85 |
Mean single sequence MFE | -20.77 |
Consensus MFE | -8.00 |
Energy contribution | -9.24 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.18 |
Mean z-score | -1.82 |
Structure conservation index | 0.39 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4889668 106 - 22224390 -CUCAAGAAA-ACGGUUUU--UUUUUUCGAUCUGUUGUCCGAAUGCAGAAACCGAAGGCGAAUCCCAAGUUCU----UAUGCGCCUUAUUUCU-UAAAAAUCUUUC--ACAUCUUCU -...((((((-.(((((((--(...((((..(....)..))))...))))))))((((((.............----....)))))).)))))-)...........--......... ( -23.03) >DroSec_CAF1 40869 107 - 1 -CUCAGGAAA-ACGGUUUU---CUUUUCGAUCUGUUGUUCGAAUGCAGAAACCGAAGGCGAAUC-CAAGUUCU----UGUGCGCCUUAUUUCUUUAAAAAUCUUUCUUUCAUCUUCU -...((((((-.(((((((---...(((((........)))))....)))))))((((((....-(((....)----))..)))))).))))))....................... ( -25.00) >DroSim_CAF1 41813 107 - 1 -CUCAGGAAA-ACGGUUUU---CUUUUCGAUCUGUUGUUCGAAUGCAGAAACCGAAGGCGAAUC-CAAGUUCU----UGUGCGCCUUAUUUCUUUAAAAAUCUUUCUUUCAUCUUCU -...((((((-.(((((((---...(((((........)))))....)))))))((((((....-(((....)----))..)))))).))))))....................... ( -25.00) >DroEre_CAF1 43691 101 - 1 -CUCAAGCAA-ACGGUUUU---AUUUUCGAUCUU---UCCGAGUGCAGAAACCGAAUGCGAAUC-CAAGUUCU----UAUGCCUCUUAUUUCUUU-AAAAUCUUUC--ACAUCUUCU -.....(((.-.(((((((---...((((.....---..))))....)))))))..)))((((.-...)))).----..................-..........--......... ( -14.70) >DroPer_CAF1 1589 105 - 1 UCUCAAGCUCUCAGGUACUCCUUUGUUCUUUCCUUUGGCCGAACGCCAAAACCGAACGCCAAUC-UGAGCCCGAACCAGUCCCUCUUCC--------UACUCCUCC--UC-CCUUCU ..((..((((..(((....)))..((((.....((((((.....))))))...)))).......-.))))..))...............--------.........--..-...... ( -16.10) >consensus _CUCAAGAAA_ACGGUUUU___CUUUUCGAUCUGUUGUCCGAAUGCAGAAACCGAAGGCGAAUC_CAAGUUCU____UGUGCGCCUUAUUUCUUUAAAAAUCUUUC__UCAUCUUCU ............(((((((......((((..........))))....)))))))((((((.....................)))))).............................. ( -8.00 = -9.24 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:34 2006