Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,889,303 – 4,889,408 |
Length | 105 |
Max. P | 0.636500 |
Location | 4,889,303 – 4,889,408 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.73 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -18.01 |
Energy contribution | -19.64 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.21 |
Mean z-score | -2.09 |
Structure conservation index | 0.55 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4889303 105 - 22224390 -----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGACA-AGCAAGAA -----------....(((.((((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..)))))))))....))))))-.))).... ( -32.30) >DroPse_CAF1 2799 94 - 1 -----------UUUGCCCCU---GUGUCCACGUUCUUUUCUGACGCCAGGAAUCUUGCUCUUCUUGGCCUAACCGAUGUCUAUUUCUGGCCGGGAUCAGG---AAGGAGGA--------- -----------......((.---((....))..((((((((((.((((((((........))))))))....(((..(((.......))))))..)))))---))))))).--------- ( -28.00) >DroSim_CAF1 41460 103 - 1 -----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGACA-AGC--GAA -----------....(((.((((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..)))))))))....))))))-.))--).. ( -31.60) >DroEre_CAF1 43362 103 - 1 -----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGGCA-GGC--GAA -----------....((((((((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..)))))))))....))))))-)))--).. ( -37.60) >DroYak_CAF1 41338 103 - 1 -----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGGCA-AGC--GAA -----------....(((((.((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..))))))))))))).)))))-...--... ( -32.40) >DroAna_CAF1 99952 112 - 1 UGUUUGGUUAACCAAAGCUUG--UUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUCUUCUUGGCCAAAGCGAUGUCUAUUUCUGGACAAAA----CAGAAAGAGAGAGAGC--GAA ..(((((....)))))((((.--.........((((((((((..((((((((........))))))))........((((((....))))))...----))))))).))).))))--... ( -33.60) >consensus ___________CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC___UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGACA_AGC__GAA ....................(((.(((((.......((((((....))))))((((((((...((((((..................))))))...)))))))).).)))).)))..... (-18.01 = -19.64 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:33 2006