Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,886,316 – 4,886,426 |
Length | 110 |
Max. P | 0.530131 |
Location | 4,886,316 – 4,886,426 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 97.72 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -19.54 |
Energy contribution | -19.35 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.90 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4886316 110 - 22224390 AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGUUUGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((.(((((((........(((.....((....))......)))((((((((........))))))))....)))))))..)))). ( -21.70) >DroSim_CAF1 38591 109 - 1 AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGU-UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((.(((((((........(((.....((....))......)))(((((((-((.....)))))))))....)))))))..)))). ( -21.70) >DroEre_CAF1 40550 109 - 1 AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUGGACGUUGUUGUGCUUGCCGU-UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((...(((((........))))).......((((((((..((((.((((.-.......)))))))).....)))))).)))))). ( -22.10) >DroYak_CAF1 38484 109 - 1 CAAAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGU-UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((.(((((((........(((.....((....))......)))(((((((-((.....)))))))))....)))))))..)))). ( -21.70) >consensus AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGU_UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((...(((((........))))).......((((((((..((((.((((.........)))))))).....)))))).)))))). (-19.54 = -19.35 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:32 2006