Locus 177

Sequence ID X_DroMel_CAF1
Location 636,508 – 636,601
Length 93
Max. P 0.971511
window280

overview

Window 0

Location 636,508 – 636,601
Length 93
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 70.66
Mean single sequence MFE -25.34
Consensus MFE -12.66
Energy contribution -12.85
Covariance contribution 0.19
Combinations/Pair 1.38
Mean z-score -2.29
Structure conservation index 0.50
SVM decision value 1.68
SVM RNA-class probability 0.971511
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 636508 93 + 22224390
GUUCCUCACCUGUCUUGCCGCCAUUACAUGGUCUGCGCGUCUCUCUCCCUCCGAGUCCUGCUCUCUCACUCCCA------CUCGUGUAGCAGAGCAGGU
.......(((((..((((.(((((...))))).((((((.............(((.....)))...........------..))))))))))..))))) ( -24.37)
>DroSec_CAF1 1822 93 + 1
GUUCCUCACCUGUCUUGCCAUCAUUACAUGGUCUGCGCGUCUCUCUCGCUCCGAGUCCUGCUCUCUCACUCCCA------CUCGUGUAGCAGAGCAGGU
....(((....((...(((((......)))))..))(((.......)))...))).(((((((((((((.....------...))).)).)))))))). ( -27.50)
>DroSim_CAF1 3844 93 + 1
GUUCCUCACCUGUCUUGCCAUCAUUACAUGGUCUGCGCGUCUCUCUCGCUCCGAGUCCUGCUCUCUCACUCCCA------CUCGUGUAGCUGAGCAGGU
....(((....((...(((((......)))))..))(((.......)))...))).(((((((.(((((.....------...))).))..))))))). ( -25.30)
>DroPer_CAF1 3080 88 + 1
--CUCUCUUCUAGCUUGUCGCUCUCUCGCGCUCUCUAUCUCUCUCUCAGUUCA---CCUGCACUGUAU------UGAUAGAAGGUGAGGCAGAGCUCAU
--.................(((((.((.(((..((((((.......((((.(.---...).))))...------.))))))..))).)).))))).... ( -24.20)
>consensus
GUUCCUCACCUGUCUUGCCACCAUUACAUGGUCUGCGCGUCUCUCUCGCUCCGAGUCCUGCUCUCUCACUCCCA______CUCGUGUAGCAGAGCAGGU
.......(((((.((((((((......)))))(((((((.............((((...........))))...........)))))))..)))))))) (-12.66 = -12.85 +   0.19) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:10 2006