Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,882,706 – 4,882,805 |
Length | 99 |
Max. P | 0.576047 |
Location | 4,882,706 – 4,882,805 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.93 |
Mean single sequence MFE | -19.30 |
Consensus MFE | -8.55 |
Energy contribution | -8.55 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.99 |
Structure conservation index | 0.44 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.576047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4882706 99 + 22224390 GCGACAUUACGAACCCGCUAGUGUCAUAAAAAAAAAAAAAAACCAAACAAAAAUCUAAGGGCUAAGAAAGAAAAUUUUUCU----UUCCAUCUAGUACUUACA ..(((((((((....)).)))))))..............................((((..(((.(((((((.....))))----)))....)))..)))).. ( -18.70) >DroSim_CAF1 35107 93 + 1 GCGACAUUACGAACCCGCUAGUGUCAUAAAAA------AAACCCAAACAAAAACCUGAGGGAUAAGAAAGAAAAUUUGUAU----UUCCAGCUAGUACGUACG (((((((((((....)).))))))).......------................(((.(..(((.(((......))).)))----..)))).......))... ( -14.50) >DroEre_CAF1 36845 86 + 1 GUGACAUUACGAACCCGCUAGUGUCAUAAAAA-----------CAAACAAAAA-CUGAGAGCUAAGAAAGAAAAUUUUCU-----UUCCAGCCAGUACUUACA (((((((((((....)).))))))))).....-----------.........(-(((...(((..(((((((....))))-----))).)))))))....... ( -20.80) >DroYak_CAF1 34726 91 + 1 GUGACAUUACGAACCCGCUAGUGUCGUAAAAA-----------CAAACAAAAA-CUGAGAGCUAAGAAGGAAAACUUUUUUUUUCUUCUUGCUAGUACUUACA ..(((((((((....)).)))))))((((..(-----------(...((....-.))..(((.(((((((((((.....)))))))))))))).))..)))). ( -23.20) >consensus GCGACAUUACGAACCCGCUAGUGUCAUAAAAA___________CAAACAAAAA_CUGAGAGCUAAGAAAGAAAAUUUUUUU____UUCCAGCUAGUACUUACA ..(((((((((....)).))))))).............................................................................. ( -8.55 = -8.55 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:26 2006