Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,881,649 – 4,881,767 |
Length | 118 |
Max. P | 0.993656 |
Location | 4,881,649 – 4,881,767 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.75 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -29.88 |
Energy contribution | -29.77 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -0.84 |
Structure conservation index | 0.96 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4881649 118 + 22224390 AGAACUGUAUUGGCAUUCGGCCAUAUGCCAUUUCUGGCCAUACUUAUAUCAA-ACAGGAGCAGC-AGCCGCAUCAGUUGAAGCGGUUAAGUGACUAAUUUAUGGCCUUUUAUGUAAGCCA ..........((((....(((((((.((((....))))..............-..((..((...-((((((.((....)).))))))..))..))....)))))))((......)))))) ( -31.20) >DroSec_CAF1 32940 119 + 1 AGAACUGUAUUGGCAUUCGGCCAUAUGCCAUUUCUGGCCAUACUUAUAUCAA-ACAGGAGCAGCCAGCCGCAUCAGUUGGAGCGGUUAAGUGACUAAUUUAUGGCCUUUUAUGUAAGCCA ..........((((....(((.....)))......(((((((......(((.-...((.....))((((((..(....)..))))))...)))......)))))))..........)))) ( -32.00) >DroSim_CAF1 34123 118 + 1 AGAACUGUAUUGGCAUUCGGCCAUAUGCCAUUUCUGGCCAUACUUAUAUCAA-ACAGGAGCAGC-AGCCGCAUCAGUUGGAGCGGUUAAGUGACUAAUUUAUGGCCUUUUAUGUAAGCCA ..........((((....(((((((.((((....))))..............-..((..((...-((((((..(....)..))))))..))..))....)))))))((......)))))) ( -30.40) >DroEre_CAF1 35814 118 + 1 AGAACUGUAUUGGCAUUCGGCCAUAUGCCAUUUCUGGCCAUACUUAUAUCAA-ACAGGAGCAGC-AGCCGCAUCAGUUGGAGCGGUUAAGUGACUAAUUUAUGGCCUUUUAUGUAAGCCA ..........((((....(((((((.((((....))))..............-..((..((...-((((((..(....)..))))))..))..))....)))))))((......)))))) ( -30.40) >DroYak_CAF1 33668 118 + 1 AGAACAGUAUUGGCAUUCGGCCAUAUGCCAUUUCUGGCCAUACUUAUAUCAA-ACAGGAGCAGC-AGCCGCAUCAGUUGGAGCGGUUAAGUGACUAAUUUAUGGCCUUUUAUGUAAGCCA ..........((((....(((((((.((((....))))..............-..((..((...-((((((..(....)..))))))..))..))....)))))))((......)))))) ( -30.40) >DroAna_CAF1 89753 118 + 1 AGAACUGUAUUGGCAUUCGGCCAUAUGCCAUUUCUGGCCAUACUUAUAUCAAAACAGGAGCA-C-GGCCGCAUCAGUUCGAGCGGUUAAGUGACUAAUUUAUGGCCUUUUGUGUAAGCCA ..........((((....(((.....)))......(((((((......((......))((((-(-.(((((.((.....)))))))...))).))....)))))))..........)))) ( -31.70) >consensus AGAACUGUAUUGGCAUUCGGCCAUAUGCCAUUUCUGGCCAUACUUAUAUCAA_ACAGGAGCAGC_AGCCGCAUCAGUUGGAGCGGUUAAGUGACUAAUUUAUGGCCUUUUAUGUAAGCCA ..........((((....(((((((.((((....)))).................((..((....((((((.((....)).))))))..))..))....)))))))((......)))))) (-29.88 = -29.77 + -0.11)
Location | 4,881,649 – 4,881,767 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.75 |
Mean single sequence MFE | -32.83 |
Consensus MFE | -30.93 |
Energy contribution | -30.79 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.94 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4881649 118 - 22224390 UGGCUUACAUAAAAGGCCAUAAAUUAGUCACUUAACCGCUUCAACUGAUGCGGCU-GCUGCUCCUGU-UUGAUAUAAGUAUGGCCAGAAAUGGCAUAUGGCCGAAUGCCAAUACAGUUCU ((((..........(((((((........(((((.((((.((....)).))))..-...((....))-......)))))...((((....)))).)))))))....)))).......... ( -32.74) >DroSec_CAF1 32940 119 - 1 UGGCUUACAUAAAAGGCCAUAAAUUAGUCACUUAACCGCUCCAACUGAUGCGGCUGGCUGCUCCUGU-UUGAUAUAAGUAUGGCCAGAAAUGGCAUAUGGCCGAAUGCCAAUACAGUUCU ((((..........(((((((...((((((.....((((((.....)).)))).)))))).......-..............((((....)))).)))))))....)))).......... ( -33.24) >DroSim_CAF1 34123 118 - 1 UGGCUUACAUAAAAGGCCAUAAAUUAGUCACUUAACCGCUCCAACUGAUGCGGCU-GCUGCUCCUGU-UUGAUAUAAGUAUGGCCAGAAAUGGCAUAUGGCCGAAUGCCAAUACAGUUCU ((((..........(((((((........(((((.((((((.....)).))))..-...((....))-......)))))...((((....)))).)))))))....)))).......... ( -31.14) >DroEre_CAF1 35814 118 - 1 UGGCUUACAUAAAAGGCCAUAAAUUAGUCACUUAACCGCUCCAACUGAUGCGGCU-GCUGCUCCUGU-UUGAUAUAAGUAUGGCCAGAAAUGGCAUAUGGCCGAAUGCCAAUACAGUUCU ((((..........(((((((........(((((.((((((.....)).))))..-...((....))-......)))))...((((....)))).)))))))....)))).......... ( -31.14) >DroYak_CAF1 33668 118 - 1 UGGCUUACAUAAAAGGCCAUAAAUUAGUCACUUAACCGCUCCAACUGAUGCGGCU-GCUGCUCCUGU-UUGAUAUAAGUAUGGCCAGAAAUGGCAUAUGGCCGAAUGCCAAUACUGUUCU ((((..........(((((((........(((((.((((((.....)).))))..-...((....))-......)))))...((((....)))).)))))))....)))).......... ( -31.14) >DroAna_CAF1 89753 118 - 1 UGGCUUACACAAAAGGCCAUAAAUUAGUCACUUAACCGCUCGAACUGAUGCGGCC-G-UGCUCCUGUUUUGAUAUAAGUAUGGCCAGAAAUGGCAUAUGGCCGAAUGCCAAUACAGUUCU ((((((.......))))))......................((((((....((((-(-((((..(((....)))..))))))))).....((((((........))))))...)))))). ( -37.60) >consensus UGGCUUACAUAAAAGGCCAUAAAUUAGUCACUUAACCGCUCCAACUGAUGCGGCU_GCUGCUCCUGU_UUGAUAUAAGUAUGGCCAGAAAUGGCAUAUGGCCGAAUGCCAAUACAGUUCU ((((..........(((((((........(((((.((((((.....)).))))......((....)).......)))))...((((....)))).)))))))....)))).......... (-30.93 = -30.79 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:26 2006