| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,880,927 – 4,881,045 |
| Length | 118 |
| Max. P | 0.732786 |
| Location | 4,880,927 – 4,881,045 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -23.16 |
| Consensus MFE | -17.82 |
| Energy contribution | -18.22 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4880927 118 + 22224390 --UGUUCGUCUAUAAAUAAAUCAAGAAAGUAAAUCAGCCACUCAGGUGGAAUAAAACCGUCUAGAAAGAAAAUUAAGUGGGUGAAGAGGUGUUAAAACUAACAUACUCACUCACUCUCUC --..................((.(((..((.......((((....))))......))..))).))..........(((((((((....((((((....))))))..)))))))))..... ( -24.92) >DroSec_CAF1 32211 114 + 1 --UGUUCGUCUAUAAAUAAAUCAAGAAAGUAAAUCAUCCACUCAGGUGGAAUAAAACCGUCUAGAAAGAAAAUUAAGUGGGUGAAGAGGUGUUAAAACUAACAUACAC--U--CUCUCCC --...............................(((((((((..(((........))).(((....)))......)))))))))((((((((............))))--.--))))... ( -22.70) >DroSim_CAF1 33416 114 + 1 --UGUUCGUCUAUAAAUAAAUCAAGAAAGUAAAUCAUCCACUCAGGUGGAAUAAAACCGUCUAGAAAGAAAAUUAAGUGGGUGAAGAGGUGUUAAAACUAACAUACAC--U--CUCUCUC --...............................(((((((((..(((........))).(((....)))......)))))))))((((((((............))))--.--))))... ( -22.70) >DroEre_CAF1 35117 108 + 1 --UGUUCGUCUAUAAAUAAAUCAAGAAAGUCAAUCAUCCACUCAGGUGGAAUAAAACCGUCUAGAAAGAAAAUUAAGUGGGUGAAGAGGUGUUAAAACUAACAUACUC--U--C------ --...............................(((((((((..(((........))).(((....)))......)))))))))((((((((((....)))))).)))--)--.------ ( -23.10) >DroYak_CAF1 32938 110 + 1 AGUGUUGGUCUAUAAAUAAAUCAAGAAAGUCAAUCAUCCACUCAGGUGGAAUAAAACCGUCUAGGAAGAAAAUUAAGUGGGUGCAGAGGUGUUAAAACUAACAUACUC--U--C------ .((((((((.....((((..((..(.....)...((((((((..(((........))).(((....)))......))))))))..))..))))...))))))))....--.--.------ ( -22.40) >consensus __UGUUCGUCUAUAAAUAAAUCAAGAAAGUAAAUCAUCCACUCAGGUGGAAUAAAACCGUCUAGAAAGAAAAUUAAGUGGGUGAAGAGGUGUUAAAACUAACAUACUC__U__CUCUC_C .................................(((((((((..(((........))).(((....)))......)))))))))....((((((....))))))................ (-17.82 = -18.22 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:23 2006