Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,878,952 – 4,879,054 |
Length | 102 |
Max. P | 0.527777 |
Location | 4,878,952 – 4,879,054 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -17.66 |
Consensus MFE | -17.82 |
Energy contribution | -17.66 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.09 |
Structure conservation index | 1.01 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4878952 102 + 22224390 CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAA-AA-----------------CCAUACCAAACACAAA .((((....((((..((((.....))))))))(.(((((....))))))..)))).............................-..-----------------................ ( -18.00) >DroSec_CAF1 30228 109 + 1 CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAA-AAA----------AAAUAUGUAUACCAAACACAAA .((((....((((..((((.....))))))))(.(((((....))))))..)))).............................-...----------...................... ( -18.00) >DroSim_CAF1 31484 110 + 1 CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAAAAAA----------AAAUAUGUAUACCAAACACAAA .((((....((((..((((.....))))))))(.(((((....))))))..)))).................................----------...................... ( -18.00) >DroEre_CAF1 33153 119 + 1 CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAACCGCUCCAACUACCAAAAA-AAAAAACCAAAAAAAAAAAAAUUACCAAACACAAA .((((....((((..((((.....))))))))(.(((((....))))))..)))).............................-................................... ( -18.00) >DroYak_CAF1 30976 112 + 1 CGACGUCAAGGCCAAGGCCAAAAAGGCUGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAACCGCUCCAACUACCGAAAA-AAAAA-------CAAAAAAAAAUACCAAAUACAAA .((((....(((((..(((.....))))))))(.(((((....))))))..)))).............................-.....-------....................... ( -16.30) >consensus CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAA_AAA__________AAAAAAAAAUACCAAACACAAA .((((....((((..((((.....))))))))(.(((((....))))))..))))................................................................. (-17.82 = -17.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:18 2006