Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,876,448 – 4,876,566 |
Length | 118 |
Max. P | 0.955831 |
Location | 4,876,448 – 4,876,566 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 88.46 |
Mean single sequence MFE | -20.58 |
Consensus MFE | -16.04 |
Energy contribution | -16.68 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.30 |
Structure conservation index | 0.78 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4876448 118 + 22224390 AAAAUAACACAACAGAACUACUGCGAAAAA-AAAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUAGCUGCUACUUUGUAGGCUUG ....................(((((((...-..........................((((((((((.....)))))))))).........(((((...)))))...)))))))..... ( -21.60) >DroSec_CAF1 27811 119 + 1 AAAAUAACACAACAGAACUACUGCGAAAAAAAAAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUUGCUGCUACUUUGUAGGCUUG ....................(((((((..............................((((((((((.....)))))))))).........(((((...)))))...)))))))..... ( -21.60) >DroSim_CAF1 29057 117 + 1 AAAAUAACACAACAGAACUACUGCGAAAAA--AAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUUGCUGCUACUUUGUAGGCUUG ....................(((((((...--.........................((((((((((.....)))))))))).........(((((...)))))...)))))))..... ( -21.60) >DroEre_CAF1 30778 105 + 1 AAAAUAACACAACAGUACUACUGCAAA-----AAA-CAUAAAAACAAAAUACAACAUUUUUCUUUUCUUAUUGAAAUGGAAAUAGAUUUCUGCAGCAUUGCU--------GUAGACUUG ............(((.....)))....-----...-.....................(((((.((((.....)))).)))))......((((((((...)))--------))))).... ( -15.90) >DroYak_CAF1 28541 112 + 1 AAA--AAUACAACAAAACUACUGCAAA-----AAAGUAUAAAAACAAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUAGCUGCUACUAUGUAAACUUG ...--...............(((((((-----((.((((.........)))).....((((((((((.....))))))))))....)))))))))(((((......)))))........ ( -22.20) >consensus AAAAUAACACAACAGAACUACUGCGAAAAA__AAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUUGCUGCUACUUUGUAGGCUUG ............(((..((((....................................((((((((((.....)))))))))).........(((((...)))))......))))..))) (-16.04 = -16.68 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:16 2006