Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,871,836 – 4,871,937 |
Length | 101 |
Max. P | 0.814853 |
Location | 4,871,836 – 4,871,937 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.70 |
Mean single sequence MFE | -16.54 |
Consensus MFE | -14.68 |
Energy contribution | -14.64 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.45 |
Structure conservation index | 0.89 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4871836 101 - 22224390 GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA-AAACAAAAA---ACGCCAGA ......((((..((((((.....))))))..((((...((.((((.......................)))).)).....))))-.........---..)))).. ( -17.10) >DroSec_CAF1 23342 103 - 1 GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA-AAAUAAAAAAAAAAG-AAGA ................(((((((((((((......))))).((((.......................)))).))).)))))..-...............-.... ( -15.00) >DroSim_CAF1 24020 104 - 1 GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA-AAAUAAAAAAAAAAGCCAGA ......((((..((((((.....))))))..((((...((.((((.......................)))).)).....))))-..............)))).. ( -17.00) >DroEre_CAF1 26216 95 - 1 GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAACAAA-AAA---------UCGCCGGA ......((((......(((((((((((((......))))).((((.......................)))).))).)))))..-...---------..)))).. ( -19.12) >DroYak_CAF1 23530 96 - 1 GAAAAAUUACCAAAAAUGUUCUGCGUUAUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCAUGAACAAAAAAA---------UAGCCAGA ...................((((.(((((..((((...((.((((.......................)))).)).....))))...)---------)))))))) ( -14.50) >consensus GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA_AAA_AAAAA___AAGCCAGA ................(((((((((((((......))))).((((.......................)))).))).)))))....................... (-14.68 = -14.64 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:14 2006