Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,871,693 – 4,871,802 |
Length | 109 |
Max. P | 0.998195 |
Location | 4,871,693 – 4,871,802 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -35.40 |
Energy contribution | -35.08 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -1.97 |
Structure conservation index | 0.93 |
SVM decision value | 3.03 |
SVM RNA-class probability | 0.998195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4871693 109 + 22224390 GUUGCAGUUGCAAGGUGCAACAUGAGAGCCACUGGAGGCAGGCAGCUGUGCGCUCGCCACAAAUUGUUGUCCGCACAUUUUCCUCCUCUUUCGGCAUUAUUUCUGC---A--------CU .((((....))))((((((..((((..(((...(((((.(((.((.((((((..((.((.....)).))..)))))).)).))))))))...))).))))...)))---)--------)) ( -38.10) >DroSec_CAF1 23191 117 + 1 ---GCAGUUGCAAGGUGCAACAUGAGAGCCACUGGAGGCAGGCAGCUGUGCGCUCGCCACAAAUUGUUGUCCGCGCAUUUUCCUCCUCUUUCGGCAUUAUUUCUGUGGCAGUGGCAGAGC ---((.(((((.....)))))......(((((((((((.(((.....((((((..((.((.....)).))..))))))...)))))))...(.(((.......))).))))))))...)) ( -42.00) >DroSim_CAF1 23880 106 + 1 ---GCAGUUGCAAGGUGCAACAUGAGAGCCACUGGAGGCAGGCAGCUGUGCGCUCGCCACAAAUUGUUGUCCGCACAUUUUCCUCCUCUUUCGGCAUUAUUUCUGC---A--------CU ---((((((((.....)))))......(((...(((((.(((.((.((((((..((.((.....)).))..)))))).)).))))))))...)))........)))---.--------.. ( -37.00) >DroEre_CAF1 26076 106 + 1 ---GCAGUUGCAAGGUGCAACAUGAGAGCCACUGGAGGCAGGCAGCUGUGCGCUCGCCACAAAUUGUUGUCCGCACAUUUUCCUCCUCUUUCGGCAUUAUUUCUGC---A--------CU ---((((((((.....)))))......(((...(((((.(((.((.((((((..((.((.....)).))..)))))).)).))))))))...)))........)))---.--------.. ( -37.00) >DroYak_CAF1 23384 106 + 1 ---GCAGUUGCAAGGUGCAACAUGAGAGCCACUGGAGGCAGGCAGCUGUGCGCUCGCCACAAAUUGUUGUCCGCACAUUUUCCUCCUCUUUCGGCAUUAUUUCUGC---A--------CU ---((((((((.....)))))......(((...(((((.(((.((.((((((..((.((.....)).))..)))))).)).))))))))...)))........)))---.--------.. ( -37.00) >consensus ___GCAGUUGCAAGGUGCAACAUGAGAGCCACUGGAGGCAGGCAGCUGUGCGCUCGCCACAAAUUGUUGUCCGCACAUUUUCCUCCUCUUUCGGCAUUAUUUCUGC___A________CU ...((((((((.....)))))......(((...(((((.(((.((.((((((..((.((.....)).))..)))))).)).))))))))...)))........))).............. (-35.40 = -35.08 + -0.32)
Location | 4,871,693 – 4,871,802 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -35.74 |
Consensus MFE | -32.20 |
Energy contribution | -32.60 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.34 |
Structure conservation index | 0.90 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4871693 109 - 22224390 AG--------U---GCAGAAAUAAUGCCGAAAGAGGAGGAAAAUGUGCGGACAACAAUUUGUGGCGAGCGCACAGCUGCCUGCCUCCAGUGGCUCUCAUGUUGCACCUUGCAACUGCAAC .(--------(---((((.......((((...(((((((....((((((..(..((.....))..)..))))))....))).))))...)))).......)))))).((((....)))). ( -37.64) >DroSec_CAF1 23191 117 - 1 GCUCUGCCACUGCCACAGAAAUAAUGCCGAAAGAGGAGGAAAAUGCGCGGACAACAAUUUGUGGCGAGCGCACAGCUGCCUGCCUCCAGUGGCUCUCAUGUUGCACCUUGCAACUGC--- .....((((((((((((((.......(((.....(.(......).).))).......))))))))(((.(((........)))))).))))))......(((((.....)))))...--- ( -36.24) >DroSim_CAF1 23880 106 - 1 AG--------U---GCAGAAAUAAUGCCGAAAGAGGAGGAAAAUGUGCGGACAACAAUUUGUGGCGAGCGCACAGCUGCCUGCCUCCAGUGGCUCUCAUGUUGCACCUUGCAACUGC--- .(--------(---((((.......((((...(((((((....((((((..(..((.....))..)..))))))....))).))))...)))).......))))))...........--- ( -34.94) >DroEre_CAF1 26076 106 - 1 AG--------U---GCAGAAAUAAUGCCGAAAGAGGAGGAAAAUGUGCGGACAACAAUUUGUGGCGAGCGCACAGCUGCCUGCCUCCAGUGGCUCUCAUGUUGCACCUUGCAACUGC--- .(--------(---((((.......((((...(((((((....((((((..(..((.....))..)..))))))....))).))))...)))).......))))))...........--- ( -34.94) >DroYak_CAF1 23384 106 - 1 AG--------U---GCAGAAAUAAUGCCGAAAGAGGAGGAAAAUGUGCGGACAACAAUUUGUGGCGAGCGCACAGCUGCCUGCCUCCAGUGGCUCUCAUGUUGCACCUUGCAACUGC--- .(--------(---((((.......((((...(((((((....((((((..(..((.....))..)..))))))....))).))))...)))).......))))))...........--- ( -34.94) >consensus AG________U___GCAGAAAUAAUGCCGAAAGAGGAGGAAAAUGUGCGGACAACAAUUUGUGGCGAGCGCACAGCUGCCUGCCUCCAGUGGCUCUCAUGUUGCACCUUGCAACUGC___ ..............((((.......((((...(((((((....((((((..(..((.....))..)..))))))....))).))))...)))).......((((.....))))))))... (-32.20 = -32.60 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:13 2006