Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,870,099 – 4,870,192 |
Length | 93 |
Max. P | 0.655453 |
Location | 4,870,099 – 4,870,192 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 86.09 |
Mean single sequence MFE | -19.32 |
Consensus MFE | -15.92 |
Energy contribution | -16.42 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.82 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4870099 93 + 22224390 UUCGAUCCACCCGAUCGACGUUUU---------UACACACCAGUUCCAUCAAAAGCCACAAGCGACAGCA--GCAACAGCACCAGCAUCA--CAAGGUGGCAAUUA .((((((.....))))))......---------.....................(((((..((....)).--((....))..........--....)))))..... ( -19.30) >DroSec_CAF1 21654 95 + 1 UUCGAUCCACCCGAUCGACGUUUU---------UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA--GCAUCAGCACCAGCAUCACACAAGGUGGCAAUUA .((((((.....))))))......---------.....................(((((((((.......--)).)).((....))..........)))))..... ( -19.80) >DroSim_CAF1 22377 95 + 1 UUCGAUCCACCCGAUCGACGUUUU---------UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA--GCAUCAGCACCAGCAUCACACAAGGUGGCAAUUA .((((((.....))))))......---------.....................(((((((((.......--)).)).((....))..........)))))..... ( -19.80) >DroEre_CAF1 24542 85 + 1 AUCGAUCCACCCGAUCGACGUUCA---------UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA--GCA-------CAG---CACACAAGGUGGCAAUUA .((((((.....))))))......---------.....................(((((..((....)).--((.-------..)---).......)))))..... ( -17.80) >DroYak_CAF1 21798 97 + 1 AUCGAUCCACCCGAUCGACGUUCAUGCACACCAUACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCACAGCA------UCAG---CACACAAGGUGGCAAUUA .((((((.....))))))......(((.((((.............................((....))...((.------...)---)......))))))).... ( -19.90) >consensus UUCGAUCCACCCGAUCGACGUUUU_________UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA__GCA_CAGCACCAGCAUCACACAAGGUGGCAAUUA .((((((.....))))))....................................(((((..((....)).........((....))..........)))))..... (-15.92 = -16.42 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:08 2006