Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,867,126 – 4,867,230 |
Length | 104 |
Max. P | 0.579508 |
Location | 4,867,126 – 4,867,230 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 95.26 |
Mean single sequence MFE | -24.76 |
Consensus MFE | -21.58 |
Energy contribution | -21.34 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.25 |
Structure conservation index | 0.87 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4867126 104 + 22224390 AAUUUCAUUCGGCUCUUGCUUUAUGUAACAUAUAUAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG ...(((((((((((((.(...(((((((..((((...........))))..)))))))..).)))))))))))))....((((..((((.....))))..)))) ( -26.70) >DroSec_CAF1 18750 102 + 1 AAUUUCUUUCGGCUCUUGCUUUAUGUAACAUA--UAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG ..........((((((..(..(((((((..((--((.........))))..)))))))..(((.(((((......)))))...))))..))))))......... ( -25.70) >DroSim_CAF1 18893 102 + 1 AAUUUCUUUCGGCUCUUGCUUUAUGUAACAUA--UAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG ..........((((((..(..(((((((..((--((.........))))..)))))))..(((.(((((......)))))...))))..))))))......... ( -25.70) >DroEre_CAF1 21841 104 + 1 AAUUUCCUUUGGCUUUUGCUUUAUGUAACAUAUAUAUUUUAUAAUUAUAGUUUGCGUGCCUCAGGGCUGACUGAAUAGCCAUUUGGGUGAGGGUCACUUCAAUG .........(((((((..(..(((((((..((((...........))))..)))))))((....(((((......)))))....)))..)))))))........ ( -22.90) >DroYak_CAF1 19057 102 + 1 AAUUUCGUUCGGCUUUUGCUUUAUGUAACAUA--UAUUUUAUAAUUGUAGUUUGCGUGCCUCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG ..........((((((..(..(((((((..((--((.........))))..)))))))((....(((((......)))))....)))..))))))......... ( -22.80) >consensus AAUUUCUUUCGGCUCUUGCUUUAUGUAACAUA__UAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG ..........((((((..(..(((((((..((...(((....)))..))..)))))))((....(((((......)))))....)))..))))))......... (-21.58 = -21.34 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:07 2006