Locus 1751

Sequence ID X_DroMel_CAF1
Location 4,866,491 – 4,866,604
Length 113
Max. P 0.998688
window2868

overview

Window 8

Location 4,866,491 – 4,866,604
Length 113
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 90.65
Mean single sequence MFE -24.98
Consensus MFE -21.88
Energy contribution -22.08
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.43
Structure conservation index 0.88
SVM decision value 3.19
SVM RNA-class probability 0.998688
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4866491 113 + 22224390
UAGUUUUUGGUCAUUGGACA------AAACUUUGACAAACAAAAAAAAAAGAAAAAGGCGAUCAAAACUUGUCGAAAGUUCGGAAGUUCGAUUGAGAGGUUUUUUUAUUGCUUUUAAAG
...((((((((((..(....------...)..))))...))))))........(((((((((.(((((((.((((..(..(....)..)..)))).)))))))...))))))))).... ( -26.40)
>DroSec_CAF1 18094 99 + 1
UAGUUUUUGGUCAUUGGACA------AAACUUUGACAA--------------AAAAGGCGAUCAAAACUUGUCGAAAGUUCGGAAGUUCGAUUGAGAGGUUUUUUUAUUGCUUUUAAAG
.........((((..(....------...)..))))..--------------.(((((((((.(((((((.((((..(..(....)..)..)))).)))))))...))))))))).... ( -25.10)
>DroSim_CAF1 18210 99 + 1
UAGUUUUUGGUCAUUGGACA------AAACUUUGACAA--------------AAAAGGCGAUCAAAACUUGUCGAAAGUUCGGAAGUUCGAUUGAGAGGUUUUUUUAUUGCUUUUAAAG
.........((((..(....------...)..))))..--------------.(((((((((.(((((((.((((..(..(....)..)..)))).)))))))...))))))))).... ( -25.10)
>DroEre_CAF1 21217 99 + 1
UAGUUUUUGGUCAAUGAACA------AAACUUUGACAA--------------AAAAGGCGAUCAAAACUUGUCGAAAGUUCGGAAGUUCGAUUGAGAGGUUUUUUUAUUGCUUUUAAAG
.........(((((......------.....)))))..--------------.(((((((((.(((((((.((((..(..(....)..)..)))).)))))))...))))))))).... ( -24.10)
>DroYak_CAF1 18438 104 + 1
UAGUUUUUGGUCAAUGAACACAAAAAAAACAUUGACAA--------------AAAAGGCGAUCAAAACUUGUCGAAAGUUCGGAAGUUCGAUUGAGAG-UUUUUUUAUUGCUUUUAAAG
.........(((((((.............)))))))..--------------.(((((((((.(((((((.((((..(..(....)..)..)))))))-))))...))))))))).... ( -24.22)
>consensus
UAGUUUUUGGUCAUUGGACA______AAACUUUGACAA______________AAAAGGCGAUCAAAACUUGUCGAAAGUUCGGAAGUUCGAUUGAGAGGUUUUUUUAUUGCUUUUAAAG
.........((((..(.............)..)))).................(((((((((.(((((((.((((..(..(....)..)..)))).)))))))...))))))))).... (-21.88 = -22.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:06 2006