Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,866,313 – 4,866,411 |
Length | 98 |
Max. P | 0.723009 |
Location | 4,866,313 – 4,866,411 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.01 |
Mean single sequence MFE | -16.82 |
Consensus MFE | -13.35 |
Energy contribution | -13.35 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.79 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.723009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4866313 98 + 22224390 UUCCAUUCCGAUCGAAGAUCUUUAUCCUACGC-----AUCUAAACAAGAACUUCCAGACGUGUGGGCUCCCCAAUGCGAUCUCUUUCU----U----UUCUUUUUUUUUAU .........(((((...........(((((((-----.(((..............))).)))))))..........))))).......----.----.............. ( -16.44) >DroSim_CAF1 18029 102 + 1 UUCCAUUCCGAUCGACGAUCUUUAUCCUACGC-----AUCUAAACAAGAACUUCCAGACGUGUGGGCUCCCCAAUGCGAUCUCUUUUUUUCUUUAUUUU----UUUUUCAU .........(((((...........(((((((-----.(((..............))).)))))))..........)))))..................----........ ( -16.44) >DroEre_CAF1 21053 85 + 1 UUCCAUUCCGAUCGACGAUCUUUAUCCUACGC-----AUCU-AACAAGAACUUUCAGACGUGUGGGUUCCCAAAUGCGAUCUCUUUC--------------------UUAU .........(((((...........(((((((-----.(((-.............))).)))))))..........)))))......--------------------.... ( -17.22) >DroYak_CAF1 18269 90 + 1 UUCCAUUCCGAUCGACGAUCUUUAUCCUACGCAUCGCAUCU-AACAAGAACUUUCAGACGUGUGGGCUCCCCGAUGCGAUCUCUUUC--------------------UUAU .........(((((.(.(((.....(((((((.((...(((-....))).......)).)))))))......)))))))))......--------------------.... ( -17.20) >consensus UUCCAUUCCGAUCGACGAUCUUUAUCCUACGC_____AUCU_AACAAGAACUUCCAGACGUGUGGGCUCCCCAAUGCGAUCUCUUUC____________________UUAU .........(((((...........(((((((......(((.....))).(.....)..)))))))..........))))).............................. (-13.35 = -13.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:05 2006