Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 629,512 – 629,602 |
Length | 90 |
Max. P | 0.722931 |
Location | 629,512 – 629,602 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 81.99 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -15.18 |
Energy contribution | -15.77 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.09 |
Mean z-score | -1.86 |
Structure conservation index | 0.71 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 629512 90 - 22224390 CAGCUUUUGAUGCUUUUUAUUGACGCUUGGUGGGGCGGCCGUAGAAAUCU-CUUUGAUUUCUGUGUUUUAUAUGGCUUCCAGAUGCUUUGA .(((.((((..(((...(((.(((((..(((......)))..(((((((.-....))))))))))))..))).)))...)))).))).... ( -22.20) >DroSim_CAF1 2565 90 - 1 AAGCUUUUGAUGAUUUUUAUUGCCGCUUGGUGGGGUGGCCGUAGGAAUCU-CUUUGAUUUCUGUGUUUUAUAUGGCUUCCAGAUGCUUCGA ((((....((.(((((((((.((((((......)))))).))))))))))-).......((((.(((......)))...)))).))))... ( -24.10) >DroYak_CAF1 2499 75 - 1 UAGCUUUUGAUGCUUUUUAU----------------GGCCCUAGGAAUCUCCUUUGAUUUCUGCGUUUUAUAUGGCUUCCAGAUGCUUUGA .(((.((((..(((...(((----------------((..(((((((((......)))))))).)..))))).)))...)))).))).... ( -17.90) >consensus AAGCUUUUGAUGCUUUUUAUUG_CGCUUGGUGGGG_GGCCGUAGGAAUCU_CUUUGAUUUCUGUGUUUUAUAUGGCUUCCAGAUGCUUUGA .(((.((((..............((((......))))((((((((((((......)))))))).........))))...)))).))).... (-15.18 = -15.77 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:07 2006