Locus 175

Sequence ID X_DroMel_CAF1
Location 629,512 – 629,602
Length 90
Max. P 0.722931
window278

overview

Window 8

Location 629,512 – 629,602
Length 90
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 81.99
Mean single sequence MFE -21.40
Consensus MFE -15.18
Energy contribution -15.77
Covariance contribution 0.59
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.71
SVM decision value 0.40
SVM RNA-class probability 0.722931
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 629512 90 - 22224390
CAGCUUUUGAUGCUUUUUAUUGACGCUUGGUGGGGCGGCCGUAGAAAUCU-CUUUGAUUUCUGUGUUUUAUAUGGCUUCCAGAUGCUUUGA
.(((.((((..(((...(((.(((((..(((......)))..(((((((.-....))))))))))))..))).)))...)))).))).... ( -22.20)
>DroSim_CAF1 2565 90 - 1
AAGCUUUUGAUGAUUUUUAUUGCCGCUUGGUGGGGUGGCCGUAGGAAUCU-CUUUGAUUUCUGUGUUUUAUAUGGCUUCCAGAUGCUUCGA
((((....((.(((((((((.((((((......)))))).))))))))))-).......((((.(((......)))...)))).))))... ( -24.10)
>DroYak_CAF1 2499 75 - 1
UAGCUUUUGAUGCUUUUUAU----------------GGCCCUAGGAAUCUCCUUUGAUUUCUGCGUUUUAUAUGGCUUCCAGAUGCUUUGA
.(((.((((..(((...(((----------------((..(((((((((......)))))))).)..))))).)))...)))).))).... ( -17.90)
>consensus
AAGCUUUUGAUGCUUUUUAUUG_CGCUUGGUGGGG_GGCCGUAGGAAUCU_CUUUGAUUUCUGUGUUUUAUAUGGCUUCCAGAUGCUUUGA
.(((.((((..............((((......))))((((((((((((......)))))))).........))))...)))).))).... (-15.18 = -15.77 +   0.59) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:07 2006