Locus 1747

Sequence ID X_DroMel_CAF1
Location 4,862,657 – 4,862,755
Length 98
Max. P 0.952006
window2861

overview

Window 1

Location 4,862,657 – 4,862,755
Length 98
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 89.46
Mean single sequence MFE -29.46
Consensus MFE -25.68
Energy contribution -26.48
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 1.42
SVM RNA-class probability 0.952006
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4862657 98 + 22224390
GCAAAUUGCGCUUGCGAAGCGAGC--------------------UGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC
((..((((((((.((((((.(((.--------------------((......)).)))..)))))).))).))))).......((((((..............)))))).......)) ( -24.14)
>DroSec_CAF1 14469 111 + 1
GCAAAUUGCGCUUGCGAAGCGAGCAA-------CUUCCAUCUGCAGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC
((.....))((((((...))))))..-------..(((...((((((((((....((..(......(((((((((.......))))))))))..))...)))))))))).....))). ( -31.30)
>DroSim_CAF1 14454 111 + 1
GCAAAUUGCGCUUGCGAAGCGAGCAA-------CUUCCAUCUGCAGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC
((.....))((((((...))))))..-------..(((...((((((((((....((..(......(((((((((.......))))))))))..))...)))))))))).....))). ( -31.30)
>DroEre_CAF1 17504 109 + 1
GCA--AUGCGCUUGCGAACCGAGCAA-------CUUCCAUCUGCAGCAUUUCUAUCUCUUCUCUGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC
...--..(((((((.....)))))..-------...((...((((((((((...........(((.(((((((((.......)))))))))..)))...)))))))))).....)))) ( -27.94)
>DroYak_CAF1 14657 118 + 1
GCAAAAUGCGCUUGAGAAGCGAGCAACGAGCCACUUCCAUCUGCAGCAUUUCUAUCUUUUCUCCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC
((.....))(((((.((((.(.((.....))).))))....((((((((((....((..(......(((((((((.......))))))))))..))...))))))))))....))))) ( -32.60)
>consensus
GCAAAUUGCGCUUGCGAAGCGAGCAA_______CUUCCAUCUGCAGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC
((.....))(((((.....))))).................(((((((((((((............(((((((((.......)))))))))..)))...))))))))))......... (-25.68 = -26.48 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:00 2006