Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,860,455 – 4,860,554 |
Length | 99 |
Max. P | 0.607304 |
Location | 4,860,455 – 4,860,554 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -12.56 |
Energy contribution | -13.76 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.60 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4860455 99 + 22224390 AUAUCGAACAUAAUUUUUUUGUUUUUCUUUUAAACAUAUUUUUUU-------UAUACCUCGCA--ACGGCUCGCAUUCGGCUGUGGGGUAUAUGAAAAUCUAUUUCCC----------- ...................(((((.......)))))...(((((.-------(((((((((((--.(((.......)))..))))))))))).)))))..........----------- ( -19.50) >DroSec_CAF1 12309 105 + 1 AUAUCGAACAUAAUUU-UUUGUUUUUCUUUUAAACAUAUUU---U-------UAUACCUCGCA--ACGGCGAGCAUUCGGCUGUGGGGUAUAUGAA-AUAUAUUUCCCAAAUAAAUGUG .......((((.....-...((((.......))))((((((---(-------(((((((((((--..(.((......)).)))))))))))).)))-)))).............)))). ( -23.00) >DroSim_CAF1 12281 107 + 1 AUAUCGAACAUAAUUU-UUUGUUUUUCUUUUAAACAUAUUU--UU-------UAUACCUCGCAAAACGGCGCGCAUUCGACUGUGGGGUAUAUGAA-AUAUAUUUC-CAAAUAAAUUUG .....(((((......-..)))))...........((((((--(.-------(((((((((((...(((.......)))..))))))))))).)))-)))).....-............ ( -21.30) >DroEre_CAF1 15390 103 + 1 AUAUCGAACAUAAUUU-UUUGUUUUUCUUUUAAACAUAUUU--UU-------UAUACCUCGCAA-AUGGCUG--GUUCUGC--UGGGGUAUAUGAA-AUACAUUUUCCAAAUAUAUGGG ........((((....-..(((((.......)))))(((((--(.-------((((((((((((-((.....--))).)))--.)))))))).)))-))).............)))).. ( -18.70) >DroYak_CAF1 12446 103 + 1 AUAUCGAACAUAAUUU-UUUGUUUUUCUUUUAAACAUAUUU--UUGUACGAGUAUACCUCGCA--ACGGCUG--AUUCUGG--UGGGGUAUAUGAA-UUAUGAUUUUGA-AUAU----- ...(((((((((((((-..(((((.......))))).....--........(((((((((((.--.(((...--...))))--)))))))))))))-)))))..)))))-....----- ( -22.90) >consensus AUAUCGAACAUAAUUU_UUUGUUUUUCUUUUAAACAUAUUU__UU_______UAUACCUCGCA__ACGGCUCGCAUUCGGCUGUGGGGUAUAUGAA_AUAUAUUUCCCAAAUAAAU__G ...(((.............(((((.......)))))................(((((((((((...(((.......)))..))))))))))))))........................ (-12.56 = -13.76 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:59 2006