Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,846,760 – 4,846,861 |
Length | 101 |
Max. P | 0.859486 |
Location | 4,846,760 – 4,846,861 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 89.98 |
Mean single sequence MFE | -22.04 |
Consensus MFE | -17.24 |
Energy contribution | -17.44 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.78 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4846760 101 + 22224390 AACGAUUUGUGGCAACAAUAGACAAUUUGAAAUCUUGAUCGAACCUUUUGUUCGCUUCGUUUCGCUGUUCGUUGACUUUUUGUCACC-AUAUCUA-UCUAUUC ...(((..(((((((((((..(((...((((((...((.(((((.....)))))..)))))))).)))..)))).....))))))).-..)))..-....... ( -20.80) >DroSec_CAF1 46104 89 + 1 AACGAUUUGUGGCAACAAUAGACAAUUUGAAAUCUUGAUCGAACCUUUUGUUCGCUUCGUUUCGCUGUUCGUUGACUU-UUGUCACC-A------------UC ........(((((((((((..(((...((((((...((.(((((.....)))))..)))))))).)))..))))....-))))))).-.------------.. ( -19.30) >DroSim_CAF1 45296 89 + 1 AACGAUUUGUGGCAACAAUAGACAAUUUGAAAUCUUGAUCGAACCUUUUGUUCGCUUCGUUUCGCUGUUCGUUGACUU-UUGUCACC-A------------UC ........(((((((((((..(((...((((((...((.(((((.....)))))..)))))))).)))..))))....-))))))).-.------------.. ( -19.30) >DroEre_CAF1 55696 96 + 1 AGCGAUUUGUGGCAACAAUAGACAAUUUGAAAUCUUGAUCGAACCUUUUGUUCGGUUCGUUUCGCUGUUCGUUGACUU-UUGUCACC-AU-----CGCCCAUC .(((((..(((((((((((..(((...((((((...((((((((.....)))))))).)))))).)))..))))....-))))))).-))-----)))..... ( -29.30) >DroYak_CAF1 47343 100 + 1 AACGAUUUGUGGCAACAAUAGACAAUUUGAAAUCUUGAUCAAACCUUUUGUUCGGUUCGUUUCGCUGUUCGUUGACUU-UUGUCACCCAU--CGACGCCCAUC ..((((..(((((((((((..(((...((((((...((((.(((.....))).)))).)))))).)))..))))....-)))))))..))--))......... ( -21.50) >consensus AACGAUUUGUGGCAACAAUAGACAAUUUGAAAUCUUGAUCGAACCUUUUGUUCGCUUCGUUUCGCUGUUCGUUGACUU_UUGUCACC_AU_______C___UC ........(((((((((((..(((...((((((...((.(((((.....))))).)).)))))).)))..)))).....)))))))................. (-17.24 = -17.44 + 0.20)
Location | 4,846,760 – 4,846,861 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 89.98 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -16.26 |
Energy contribution | -16.10 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.70 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4846760 101 - 22224390 GAAUAGA-UAGAUAU-GGUGACAAAAAGUCAACGAACAGCGAAACGAAGCGAACAAAAGGUUCGAUCAAGAUUUCAAAUUGUCUAUUGUUGCCACAAAUCGUU .......-..(((.(-((..((((...(((........((........))((((.....)))))))..((((........)))).))))..)))...)))... ( -19.70) >DroSec_CAF1 46104 89 - 1 GA------------U-GGUGACAA-AAGUCAACGAACAGCGAAACGAAGCGAACAAAAGGUUCGAUCAAGAUUUCAAAUUGUCUAUUGUUGCCACAAAUCGUU ..------------(-((..((((-.((.(((((.....))....((..(((((.....))))).))...........))).)).))))..)))......... ( -20.00) >DroSim_CAF1 45296 89 - 1 GA------------U-GGUGACAA-AAGUCAACGAACAGCGAAACGAAGCGAACAAAAGGUUCGAUCAAGAUUUCAAAUUGUCUAUUGUUGCCACAAAUCGUU ..------------(-((..((((-.((.(((((.....))....((..(((((.....))))).))...........))).)).))))..)))......... ( -20.00) >DroEre_CAF1 55696 96 - 1 GAUGGGCG-----AU-GGUGACAA-AAGUCAACGAACAGCGAAACGAACCGAACAAAAGGUUCGAUCAAGAUUUCAAAUUGUCUAUUGUUGCCACAAAUCGCU (((.((((-----(.-.(((((((-(((((..((.....))...((((((........)))))).....)))))....))))).))..)))))....)))... ( -29.70) >DroYak_CAF1 47343 100 - 1 GAUGGGCGUCG--AUGGGUGACAA-AAGUCAACGAACAGCGAAACGAACCGAACAAAAGGUUUGAUCAAGAUUUCAAAUUGUCUAUUGUUGCCACAAAUCGUU (((.((((.((--(((((..(...-(((((..((.....))...((((((........)))))).....)))))....)..))))))).))))....)))... ( -26.80) >consensus GA___G_______AU_GGUGACAA_AAGUCAACGAACAGCGAAACGAAGCGAACAAAAGGUUCGAUCAAGAUUUCAAAUUGUCUAUUGUUGCCACAAAUCGUU ................((..((((.....................((..(((((.....))))).)).((((........)))).))))..)).......... (-16.26 = -16.10 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:50 2006